Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06425

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
1,449,555	-		HSERO_RS06415	0.58	-0.4
1,449,714	+		HSERO_RS06415	0.74	-0.3
1,450,003	-				-0.2
1,450,046	+				+0.4
1,450,267	+		HSERO_RS06420	0.54	+1.2
1,450,321	+		HSERO_RS06420	0.74	+1.4
1,450,389	+				+1.8
1,450,407	-				-0.7
1,450,416	+				+0.3
1,450,424	-				+0.6
1,450,493	+				-0.7
1,450,554	+				-0.5
1,450,695	+		HSERO_RS06425	0.19	-0.3
1,450,708	-		HSERO_RS06425	0.20	-1.0
1,450,799	+		HSERO_RS06425	0.27	+0.7
1,450,809	+		HSERO_RS06425	0.27	+0.3
1,451,073	+		HSERO_RS06425	0.47	+0.5
1,451,165	-		HSERO_RS06425	0.54	+0.6
1,451,173	+		HSERO_RS06425	0.54	+1.6
1,451,255	-		HSERO_RS06425	0.60	-0.0
1,451,272	-		HSERO_RS06425	0.62	-0.1
1,451,429	-		HSERO_RS06425	0.73	-0.0
1,451,692	+				-0.3
1,451,714	+				+0.2
1,451,759	+				+0.8
1,451,785	+				-0.3
1,451,889	-		HSERO_RS06430	0.14	+0.9
1,452,331	-				+0.8
1,452,415	+				-0.7
1,452,423	-				-0.6
1,452,573	+		HSERO_RS06435	0.20	+0.7
1,452,581	-		HSERO_RS06435	0.21	+1.5
1,452,725	-		HSERO_RS06435	0.31	+0.1
1,452,757	+		HSERO_RS06435	0.33	-0.3