Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05855

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
1,332,247	-		HSERO_RS05850	0.46	+0.3
1,332,365	-		HSERO_RS05850	0.54	+0.2
1,332,393	+		HSERO_RS05850	0.56	-0.8
1,332,440	-		HSERO_RS05850	0.59	+0.2
1,332,509	-		HSERO_RS05850	0.64	+0.4
1,332,612	-		HSERO_RS05850	0.72	-0.1
1,332,615	+		HSERO_RS05850	0.72	-1.0
1,332,654	+		HSERO_RS05850	0.75	-2.0
1,332,682	+		HSERO_RS05850	0.77	-0.8
1,332,822	-		HSERO_RS05850	0.87	-0.1
1,333,076	+				+0.8
1,333,136	+				+0.1
1,333,147	+				+0.5
1,333,613	+		HSERO_RS05855	0.73	+0.6
1,333,631	+		HSERO_RS05855	0.76	+0.5
1,333,720	+				+0.1
1,333,918	+		HSERO_RS05860	0.30	+0.2
1,333,963	+		HSERO_RS05860	0.40	+0.4
1,333,983	-		HSERO_RS05860	0.45	-0.2
1,334,147	-		HSERO_RS05860	0.83	+0.4
1,334,212	-				+0.3
1,334,302	-				-0.5