Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04830

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
1,056,559	-		HSERO_RS04820	0.75	-0.1
1,056,638	-		HSERO_RS04820	0.81	+0.0
1,056,753	-		HSERO_RS04820	0.88	+0.7
1,056,873	+				-0.5
1,056,912	+				-0.2
1,056,920	-				-0.8
1,056,951	+				-0.1
1,056,959	-				+0.7
1,056,968	+				-0.4
1,057,030	+				-1.8
1,057,039	+				+0.6
1,057,091	-		HSERO_RS04825	0.14	+0.5
1,057,126	-		HSERO_RS04825	0.25	+0.3
1,057,268	+		HSERO_RS04825	0.71	+1.0
1,057,276	-		HSERO_RS04825	0.73	+0.6
1,057,359	-				+0.5
1,057,397	-				-3.0
1,057,443	+				+0.8
1,057,550	-		HSERO_RS04830	0.11	-1.6
1,057,606	-		HSERO_RS04830	0.16	-1.6
1,057,741	+		HSERO_RS04830	0.29	-0.0
1,057,776	+		HSERO_RS04830	0.33	-0.8
1,057,831	-		HSERO_RS04830	0.38	-1.8
1,057,891	+		HSERO_RS04830	0.44	-0.9
1,057,899	-		HSERO_RS04830	0.45	-1.0
1,058,067	+		HSERO_RS04830	0.61	+0.8
1,058,114	+		HSERO_RS04830	0.66	-0.7
1,058,127	-		HSERO_RS04830	0.67	-1.2
1,058,218	+		HSERO_RS04830	0.76	-1.4
1,058,333	-		HSERO_RS04830	0.87	-0.8
1,058,381	+				-0.7
1,058,381	+				-0.9
1,058,381	+				-1.2
1,058,508	+				-0.5
1,058,508	+				-0.5
1,058,516	-				-0.6
1,058,516	-				+0.1
1,058,606	-				-0.5
1,058,949	+		HSERO_RS04835	0.32	+1.8
1,059,430	+				-0.7
1,059,449	+				-0.5
1,059,449	+				-0.6
1,059,462	-				-0.3