Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04675

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
1,017,920	-		HSERO_RS04670	0.81	-0.1
1,017,949	+		HSERO_RS04670	0.83	+0.4
1,018,174	+				-1.2
1,018,386	-				-0.0
1,018,473	-				-0.1
1,018,542	-				-0.8
1,018,589	+				+0.6
1,018,589	+				-0.5
1,018,589	+				+0.9
1,018,589	+				+0.9
1,018,597	-				+1.2
1,018,597	-				-0.0
1,018,597	-				+0.3
1,018,609	-				-1.9
1,018,711	-				-1.5
1,018,872	-		HSERO_RS04675	0.24	+0.6
1,018,878	+		HSERO_RS04675	0.24	+0.4
1,018,969	-		HSERO_RS04675	0.34	+1.1
1,019,703	+				+0.1
1,019,828	+				-0.4
1,019,964	+				-0.6
1,020,005	-				+0.1
1,020,056	+		HSERO_RS04680	0.13	+0.5
1,020,064	-		HSERO_RS04680	0.15	-1.0
1,020,086	+		HSERO_RS04680	0.19	-0.5
1,020,099	+		HSERO_RS04680	0.22	-1.2
1,020,107	-		HSERO_RS04680	0.24	-0.1
1,020,249	+		HSERO_RS04680	0.53	+0.5
1,020,278	-		HSERO_RS04680	0.59	+0.9