Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04555

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS04550 and HSERO_RS04555 are separated by 49 nucleotidesHSERO_RS04555 and HSERO_RS04560 are separated by 143 nucleotides HSERO_RS04550: HSERO_RS04550 - capsid protein, at 993,697 to 994,740 _RS04550 HSERO_RS04555: HSERO_RS04555 - capsid protein, at 994,790 to 995,632 _RS04555 HSERO_RS04560: HSERO_RS04560 - terminase, at 995,776 to 997,557 _RS04560 Position (kb) 994 995 996Strain fitness (log2 ratio) -2 -1 0 1at 993.909 kb on - strand, within HSERO_RS04550at 994.402 kb on + strand, within HSERO_RS04550at 994.500 kb on + strand, within HSERO_RS04550at 994.748 kb on + strandat 994.867 kb on + strandat 994.931 kb on + strand, within HSERO_RS04555at 995.194 kb on - strand, within HSERO_RS04555at 995.263 kb on + strand, within HSERO_RS04555at 995.324 kb on + strand, within HSERO_RS04555at 995.325 kb on + strand, within HSERO_RS04555at 995.446 kb on - strand, within HSERO_RS04555at 995.492 kb on - strand, within HSERO_RS04555at 995.565 kb on - strandat 995.708 kb on + strandat 995.975 kb on + strand, within HSERO_RS04560at 996.063 kb on + strand, within HSERO_RS04560at 996.189 kb on + strand, within HSERO_RS04560at 996.212 kb on - strand, within HSERO_RS04560at 996.350 kb on - strand, within HSERO_RS04560at 996.448 kb on - strand, within HSERO_RS04560at 996.455 kb on - strand, within HSERO_RS04560at 996.471 kb on + strand, within HSERO_RS04560at 996.517 kb on + strand, within HSERO_RS04560at 996.522 kb on + strand, within HSERO_RS04560at 996.525 kb on - strand, within HSERO_RS04560at 996.525 kb on - strand, within HSERO_RS04560at 996.525 kb on - strand, within HSERO_RS04560at 996.607 kb on - strand, within HSERO_RS04560

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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993,909 - HSERO_RS04550 0.20 +0.4
994,402 + HSERO_RS04550 0.68 -0.1
994,500 + HSERO_RS04550 0.77 -0.5
994,748 + -0.4
994,867 + +0.1
994,931 + HSERO_RS04555 0.17 -2.0
995,194 - HSERO_RS04555 0.48 -0.5
995,263 + HSERO_RS04555 0.56 +1.0
995,324 + HSERO_RS04555 0.63 -0.2
995,325 + HSERO_RS04555 0.63 +0.1
995,446 - HSERO_RS04555 0.78 -0.5
995,492 - HSERO_RS04555 0.83 -1.1
995,565 - +0.4
995,708 + +0.1
995,975 + HSERO_RS04560 0.11 +0.2
996,063 + HSERO_RS04560 0.16 +1.6
996,189 + HSERO_RS04560 0.23 +0.5
996,212 - HSERO_RS04560 0.24 -1.0
996,350 - HSERO_RS04560 0.32 +0.5
996,448 - HSERO_RS04560 0.38 +0.5
996,455 - HSERO_RS04560 0.38 -0.1
996,471 + HSERO_RS04560 0.39 +0.4
996,517 + HSERO_RS04560 0.42 -0.8
996,522 + HSERO_RS04560 0.42 -0.4
996,525 - HSERO_RS04560 0.42 -0.2
996,525 - HSERO_RS04560 0.42 -0.2
996,525 - HSERO_RS04560 0.42 +0.5
996,607 - HSERO_RS04560 0.47 +0.4

Or see this region's nucleotide sequence