Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04475

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS04465 and HSERO_RS04470 are separated by 2 nucleotidesHSERO_RS04470 and HSERO_RS04475 overlap by 4 nucleotidesHSERO_RS04475 and HSERO_RS04480 are separated by 5 nucleotides HSERO_RS04465: HSERO_RS04465 - tail fiber assembly protein, at 983,532 to 983,804 _RS04465 HSERO_RS04470: HSERO_RS04470 - hypothetical protein, at 983,807 to 984,481 _RS04470 HSERO_RS04475: HSERO_RS04475 - tail fiber assembly protein, at 984,478 to 985,014 _RS04475 HSERO_RS04480: HSERO_RS04480 - tail protein, at 985,020 to 986,753 _RS04480 Position (kb) 984 985 986Strain fitness (log2 ratio) -1 0 1 2at 983.813 kb on - strandat 983.929 kb on + strand, within HSERO_RS04470at 983.929 kb on + strand, within HSERO_RS04470at 983.941 kb on + strandat 984.021 kb on + strand, within HSERO_RS04470at 984.359 kb on + strand, within HSERO_RS04470at 984.372 kb on - strand, within HSERO_RS04470at 984.891 kb on - strand, within HSERO_RS04475at 985.062 kb on + strandat 985.099 kb on - strandat 985.139 kb on + strandat 985.391 kb on + strand, within HSERO_RS04480at 985.752 kb on - strand, within HSERO_RS04480at 985.775 kb on + strand, within HSERO_RS04480at 985.777 kb on - strand, within HSERO_RS04480at 985.948 kb on + strand, within HSERO_RS04480at 985.956 kb on - strand, within HSERO_RS04480at 985.984 kb on + strand, within HSERO_RS04480

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
remove
983,813 - +1.0
983,929 + HSERO_RS04470 0.18 +0.5
983,929 + HSERO_RS04470 0.18 -1.5
983,941 + +0.5
984,021 + HSERO_RS04470 0.32 -0.1
984,359 + HSERO_RS04470 0.82 -0.5
984,372 - HSERO_RS04470 0.84 -0.7
984,891 - HSERO_RS04475 0.77 +0.6
985,062 + +0.1
985,099 - +2.1
985,139 + -0.2
985,391 + HSERO_RS04480 0.21 +0.2
985,752 - HSERO_RS04480 0.42 -0.8
985,775 + HSERO_RS04480 0.44 +0.2
985,777 - HSERO_RS04480 0.44 +1.2
985,948 + HSERO_RS04480 0.54 -1.0
985,956 - HSERO_RS04480 0.54 -0.1
985,984 + HSERO_RS04480 0.56 -0.3

Or see this region's nucleotide sequence