Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS04045 and HSERO_RS04050 overlap by 11 nucleotides HSERO_RS04050 and HSERO_RS04055 overlap by 4 nucleotides HSERO_RS04055 and HSERO_RS04060 overlap by 11 nucleotides
HSERO_RS04045: HSERO_RS04045 - pilus assembly protein, at 885,696 to 886,961
_RS04045
HSERO_RS04050: HSERO_RS04050 - type IV Tfp pilus assembly PilP protein, at 886,951 to 887,460
_RS04050
HSERO_RS04055: HSERO_RS04055 - secretion system protein E, at 887,457 to 889,082
_RS04055
HSERO_RS04060: HSERO_RS04060 - type II secretion system protein F, at 889,072 to 890,145
_RS04060
Position (kb) 887
888
889
890 Strain fitness (log2 ratio) -1
0
1 at 886.648 kb on - strand, within HSERO_RS04045 at 886.652 kb on - strand, within HSERO_RS04045 at 887.009 kb on - strand, within HSERO_RS04050 at 887.064 kb on + strand, within HSERO_RS04050 at 887.224 kb on + strand, within HSERO_RS04050 at 887.225 kb on - strand, within HSERO_RS04050 at 887.283 kb on + strand, within HSERO_RS04050 at 887.437 kb on + strand at 887.445 kb on - strand at 887.773 kb on + strand, within HSERO_RS04055 at 887.975 kb on + strand, within HSERO_RS04055 at 887.983 kb on - strand, within HSERO_RS04055 at 888.539 kb on + strand, within HSERO_RS04055 at 888.547 kb on - strand, within HSERO_RS04055 at 888.633 kb on - strand, within HSERO_RS04055 at 888.642 kb on + strand, within HSERO_RS04055 at 888.652 kb on + strand, within HSERO_RS04055 at 889.072 kb on + strand at 889.072 kb on + strand at 889.081 kb on + strand at 889.089 kb on - strand at 889.586 kb on + strand, within HSERO_RS04060 at 889.603 kb on + strand, within HSERO_RS04060 at 889.836 kb on + strand at 889.867 kb on + strand, within HSERO_RS04060
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 886,648 - HSERO_RS04045 0.75 +0.8 886,652 - HSERO_RS04045 0.76 +1.3 887,009 - HSERO_RS04050 0.11 -0.6 887,064 + HSERO_RS04050 0.22 +1.4 887,224 + HSERO_RS04050 0.54 -0.1 887,225 - HSERO_RS04050 0.54 -0.6 887,283 + HSERO_RS04050 0.65 +1.1 887,437 + +0.3 887,445 - -1.6 887,773 + HSERO_RS04055 0.19 +1.1 887,975 + HSERO_RS04055 0.32 +1.2 887,983 - HSERO_RS04055 0.32 +0.8 888,539 + HSERO_RS04055 0.67 +1.1 888,547 - HSERO_RS04055 0.67 +0.8 888,633 - HSERO_RS04055 0.72 -0.5 888,642 + HSERO_RS04055 0.73 +0.8 888,652 + HSERO_RS04055 0.73 -0.4 889,072 + -0.1 889,072 + -0.3 889,081 + +0.8 889,089 - -0.2 889,586 + HSERO_RS04060 0.48 +0.8 889,603 + HSERO_RS04060 0.49 +0.8 889,836 + +1.1 889,867 + HSERO_RS04060 0.74 -0.0
Or see this region's nucleotide sequence