Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS03990 and HSERO_RS03995 are separated by 2 nucleotides HSERO_RS03995 and HSERO_RS04000 are separated by 93 nucleotides HSERO_RS04000 and HSERO_RS04005 are separated by 42 nucleotides HSERO_RS04005 and HSERO_RS04010 are separated by 11 nucleotides
HSERO_RS03990: HSERO_RS03990 - type III secretion protein, at 875,333 to 876,448
_RS03990
HSERO_RS03995: HSERO_RS03995 - hypothetical protein, at 876,451 to 876,981
_RS03995
HSERO_RS04000: HSERO_RS04000 - type III secretion protein, at 877,075 to 877,464
_RS04000
HSERO_RS04005: HSERO_RS04005 - type III secretion protein, at 877,507 to 878,358
_RS04005
HSERO_RS04010: HSERO_RS04010 - hypothetical protein, at 878,370 to 878,840
_RS04010
Position (kb) 877
878 Strain fitness (log2 ratio) -2
-1
0
1
2 at 876.219 kb on - strand, within HSERO_RS03990 at 876.240 kb on - strand, within HSERO_RS03990 at 876.343 kb on - strand at 876.375 kb on + strand at 876.494 kb on + strand at 876.609 kb on + strand, within HSERO_RS03995 at 876.806 kb on - strand, within HSERO_RS03995 at 876.968 kb on + strand at 877.019 kb on + strand at 877.019 kb on + strand at 877.019 kb on + strand at 877.027 kb on - strand at 877.027 kb on - strand at 877.063 kb on + strand at 877.085 kb on + strand at 877.093 kb on - strand at 877.225 kb on + strand, within HSERO_RS04000 at 877.415 kb on - strand, within HSERO_RS04000 at 877.671 kb on + strand, within HSERO_RS04005 at 877.678 kb on + strand at 877.970 kb on + strand, within HSERO_RS04005 at 877.978 kb on - strand, within HSERO_RS04005 at 878.048 kb on + strand, within HSERO_RS04005 at 878.056 kb on + strand, within HSERO_RS04005 at 878.193 kb on + strand at 878.193 kb on + strand, within HSERO_RS04005 at 878.283 kb on + strand at 878.291 kb on - strand at 878.303 kb on - strand at 878.303 kb on - strand at 878.358 kb on + strand at 878.371 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 876,219 - HSERO_RS03990 0.79 +0.4 876,240 - HSERO_RS03990 0.81 +1.2 876,343 - -0.1 876,375 + +0.2 876,494 + +0.6 876,609 + HSERO_RS03995 0.30 +0.9 876,806 - HSERO_RS03995 0.67 +1.6 876,968 + -0.1 877,019 + -0.8 877,019 + +0.7 877,019 + -1.8 877,027 - +0.6 877,027 - +0.1 877,063 + +1.8 877,085 + +0.1 877,093 - -1.2 877,225 + HSERO_RS04000 0.38 +0.6 877,415 - HSERO_RS04000 0.87 +0.5 877,671 + HSERO_RS04005 0.19 +0.8 877,678 + +0.2 877,970 + HSERO_RS04005 0.54 +0.4 877,978 - HSERO_RS04005 0.55 +2.0 878,048 + HSERO_RS04005 0.63 +0.0 878,056 + HSERO_RS04005 0.64 +1.6 878,193 + +2.4 878,193 + HSERO_RS04005 0.81 -1.3 878,283 + -0.8 878,291 - +2.4 878,303 - -0.4 878,303 - +2.4 878,358 + +0.8 878,371 - +0.8
Or see this region's nucleotide sequence