Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS03380

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS03375 and HSERO_RS03380 are separated by 317 nucleotidesHSERO_RS03380 and HSERO_RS03385 are separated by 69 nucleotidesHSERO_RS03385 and HSERO_RS03390 are separated by 241 nucleotides HSERO_RS03375: HSERO_RS03375 - translation factor Sua5, at 739,829 to 740,872 _RS03375 HSERO_RS03380: HSERO_RS03380 - membrane protein, at 741,190 to 741,927 _RS03380 HSERO_RS03385: HSERO_RS03385 - flavin reductase, at 741,997 to 742,506 _RS03385 HSERO_RS03390: HSERO_RS03390 - hypothetical protein, at 742,748 to 744,631 _RS03390 Position (kb) 741 742Strain fitness (log2 ratio) -1 0 1at 740.866 kb on + strandat 741.002 kb on - strandat 741.073 kb on + strandat 741.335 kb on + strand, within HSERO_RS03380at 741.375 kb on + strand, within HSERO_RS03380at 741.455 kb on + strand, within HSERO_RS03380at 741.511 kb on + strand, within HSERO_RS03380at 741.538 kb on - strand, within HSERO_RS03380at 741.598 kb on - strand, within HSERO_RS03380at 741.713 kb on + strand, within HSERO_RS03380at 741.794 kb on - strand, within HSERO_RS03380at 741.798 kb on + strand, within HSERO_RS03380at 741.921 kb on + strandat 742.157 kb on - strand, within HSERO_RS03385at 742.187 kb on - strand, within HSERO_RS03385at 742.225 kb on + strand, within HSERO_RS03385at 742.717 kb on + strandat 742.787 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
remove
740,866 + -0.1
741,002 - -1.1
741,073 + -0.1
741,335 + HSERO_RS03380 0.20 +0.2
741,375 + HSERO_RS03380 0.25 -0.5
741,455 + HSERO_RS03380 0.36 +0.3
741,511 + HSERO_RS03380 0.43 +0.1
741,538 - HSERO_RS03380 0.47 -0.3
741,598 - HSERO_RS03380 0.55 -1.0
741,713 + HSERO_RS03380 0.71 +0.2
741,794 - HSERO_RS03380 0.82 -0.0
741,798 + HSERO_RS03380 0.82 -0.1
741,921 + +0.1
742,157 - HSERO_RS03385 0.31 -0.1
742,187 - HSERO_RS03385 0.37 +0.1
742,225 + HSERO_RS03385 0.45 -0.3
742,717 + +0.9
742,787 + +0.5

Or see this region's nucleotide sequence