Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02815

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02810 and HSERO_RS02815 are separated by 195 nucleotidesHSERO_RS02815 and HSERO_RS02820 are separated by 60 nucleotides HSERO_RS02810: HSERO_RS02810 - methyltransferase, at 617,928 to 618,605 _RS02810 HSERO_RS02815: HSERO_RS02815 - HxlR family transcriptional regulator, at 618,801 to 619,247 _RS02815 HSERO_RS02820: HSERO_RS02820 - membrane protein, at 619,308 to 620,522 _RS02820 Position (kb) 618 619 620Strain fitness (log2 ratio) -2 -1 0 1at 617.841 kb on + strandat 617.841 kb on + strandat 617.933 kb on - strandat 617.936 kb on - strandat 617.936 kb on - strandat 617.950 kb on - strandat 618.122 kb on + strand, within HSERO_RS02810at 618.130 kb on - strandat 618.199 kb on - strand, within HSERO_RS02810at 618.317 kb on + strand, within HSERO_RS02810at 618.352 kb on - strand, within HSERO_RS02810at 618.353 kb on - strand, within HSERO_RS02810at 618.404 kb on + strand, within HSERO_RS02810at 618.412 kb on - strandat 618.444 kb on + strand, within HSERO_RS02810at 618.456 kb on + strand, within HSERO_RS02810at 618.560 kb on - strandat 618.609 kb on + strandat 618.900 kb on + strand, within HSERO_RS02815at 618.900 kb on + strand, within HSERO_RS02815at 619.190 kb on + strand, within HSERO_RS02815at 619.405 kb on + strandat 619.618 kb on + strand, within HSERO_RS02820at 619.634 kb on + strand, within HSERO_RS02820at 619.728 kb on + strand, within HSERO_RS02820at 619.744 kb on + strand, within HSERO_RS02820at 619.946 kb on + strand, within HSERO_RS02820at 620.237 kb on + strand, within HSERO_RS02820

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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617,841 + +0.1
617,841 + -0.1
617,933 - -0.3
617,936 - +0.8
617,936 - +0.5
617,950 - -0.0
618,122 + HSERO_RS02810 0.29 -0.7
618,130 - -0.2
618,199 - HSERO_RS02810 0.40 -0.6
618,317 + HSERO_RS02810 0.57 -0.9
618,352 - HSERO_RS02810 0.63 +0.5
618,353 - HSERO_RS02810 0.63 +0.6
618,404 + HSERO_RS02810 0.70 -0.5
618,412 - -0.1
618,444 + HSERO_RS02810 0.76 +0.7
618,456 + HSERO_RS02810 0.78 -0.4
618,560 - +0.5
618,609 + -1.8
618,900 + HSERO_RS02815 0.22 +0.5
618,900 + HSERO_RS02815 0.22 +1.1
619,190 + HSERO_RS02815 0.87 -0.7
619,405 + -0.9
619,618 + HSERO_RS02820 0.26 -0.7
619,634 + HSERO_RS02820 0.27 +0.7
619,728 + HSERO_RS02820 0.35 -0.4
619,744 + HSERO_RS02820 0.36 +0.3
619,946 + HSERO_RS02820 0.53 +0.3
620,237 + HSERO_RS02820 0.76 -1.0

Or see this region's nucleotide sequence