Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS02540 and HSERO_RS02545 are separated by 82 nucleotides HSERO_RS02545 and HSERO_RS02550 are separated by 110 nucleotides HSERO_RS02550 and HSERO_RS02555 are separated by 400 nucleotides
HSERO_RS02540: HSERO_RS02540 - ABC transporter substrate-binding protein, at 558,645 to 559,682
_RS02540
HSERO_RS02545: HSERO_RS02545 - membrane protein, at 559,765 to 560,391
_RS02545
HSERO_RS02550: HSERO_RS02550 - protamine P1 domain containing protein, at 560,502 to 560,711
_RS02550
HSERO_RS02555: HSERO_RS02555 - chemotaxis protein, at 561,112 to 562,680
_RS02555
Position (kb) 559
560
561 Strain fitness (log2 ratio) -2
-1
0
1 at 558.783 kb on + strand, within HSERO_RS02540 at 558.791 kb on - strand, within HSERO_RS02540 at 558.791 kb on - strand, within HSERO_RS02540 at 558.961 kb on - strand at 559.041 kb on + strand, within HSERO_RS02540 at 559.226 kb on + strand, within HSERO_RS02540 at 559.328 kb on + strand, within HSERO_RS02540 at 559.333 kb on + strand, within HSERO_RS02540 at 559.351 kb on - strand, within HSERO_RS02540 at 559.441 kb on - strand, within HSERO_RS02540 at 559.509 kb on + strand, within HSERO_RS02540 at 559.538 kb on - strand, within HSERO_RS02540 at 559.582 kb on + strand at 559.676 kb on + strand at 559.767 kb on + strand at 560.224 kb on - strand, within HSERO_RS02545 at 560.274 kb on - strand, within HSERO_RS02545 at 560.378 kb on - strand at 560.406 kb on + strand at 560.414 kb on - strand at 560.414 kb on - strand at 560.801 kb on + strand at 560.855 kb on - strand at 560.876 kb on + strand at 560.948 kb on - strand at 561.134 kb on + strand at 561.252 kb on + strand at 561.270 kb on + strand, within HSERO_RS02555
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 558,783 + HSERO_RS02540 0.13 +0.6 558,791 - HSERO_RS02540 0.14 +0.2 558,791 - HSERO_RS02540 0.14 +1.1 558,961 - -0.1 559,041 + HSERO_RS02540 0.38 +0.2 559,226 + HSERO_RS02540 0.56 +0.9 559,328 + HSERO_RS02540 0.66 +0.2 559,333 + HSERO_RS02540 0.66 +0.2 559,351 - HSERO_RS02540 0.68 +0.9 559,441 - HSERO_RS02540 0.77 +0.5 559,509 + HSERO_RS02540 0.83 -0.4 559,538 - HSERO_RS02540 0.86 -1.0 559,582 + +0.3 559,676 + +0.7 559,767 + -1.4 560,224 - HSERO_RS02545 0.73 +0.5 560,274 - HSERO_RS02545 0.81 +1.3 560,378 - +0.9 560,406 + -0.6 560,414 - -0.5 560,414 - -0.1 560,801 + +0.5 560,855 - +0.4 560,876 + -0.5 560,948 - -2.1 561,134 + +0.6 561,252 + +0.1 561,270 + HSERO_RS02555 0.10 +0.0
Or see this region's nucleotide sequence