Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02005

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02000 and HSERO_RS02005 are separated by 133 nucleotidesHSERO_RS02005 and HSERO_RS02010 are separated by 75 nucleotides HSERO_RS02000: HSERO_RS02000 - magnesium transporter, at 438,009 to 438,974 _RS02000 HSERO_RS02005: HSERO_RS02005 - membrane protein, at 439,108 to 439,578 _RS02005 HSERO_RS02010: HSERO_RS02010 - anhydro-N-acetylmuramic acid kinase, at 439,654 to 440,781 _RS02010 Position (kb) 439 440Strain fitness (log2 ratio) -2 -1 0 1at 438.425 kb on + strand, within HSERO_RS02000at 438.540 kb on - strand, within HSERO_RS02000at 438.548 kb on - strand, within HSERO_RS02000at 438.646 kb on + strand, within HSERO_RS02000at 438.646 kb on + strand, within HSERO_RS02000at 438.656 kb on + strand, within HSERO_RS02000at 438.980 kb on + strandat 438.988 kb on - strandat 439.375 kb on + strand, within HSERO_RS02005at 439.388 kb on - strand, within HSERO_RS02005at 439.455 kb on + strand, within HSERO_RS02005at 439.500 kb on - strand, within HSERO_RS02005at 439.580 kb on + strandat 439.831 kb on + strand, within HSERO_RS02010at 439.888 kb on + strand, within HSERO_RS02010at 439.914 kb on + strand, within HSERO_RS02010at 439.951 kb on + strand, within HSERO_RS02010at 439.968 kb on - strand, within HSERO_RS02010at 439.968 kb on - strand, within HSERO_RS02010at 439.997 kb on - strand, within HSERO_RS02010at 440.020 kb on + strand, within HSERO_RS02010at 440.214 kb on - strand, within HSERO_RS02010at 440.279 kb on + strand, within HSERO_RS02010

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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438,425 + HSERO_RS02000 0.43 -1.1
438,540 - HSERO_RS02000 0.55 +0.9
438,548 - HSERO_RS02000 0.56 -0.1
438,646 + HSERO_RS02000 0.66 +0.4
438,646 + HSERO_RS02000 0.66 +1.3
438,656 + HSERO_RS02000 0.67 -2.6
438,980 + -1.3
438,988 - +0.1
439,375 + HSERO_RS02005 0.57 +0.9
439,388 - HSERO_RS02005 0.59 +0.8
439,455 + HSERO_RS02005 0.74 +0.3
439,500 - HSERO_RS02005 0.83 +0.5
439,580 + +0.1
439,831 + HSERO_RS02010 0.16 +0.7
439,888 + HSERO_RS02010 0.21 -0.4
439,914 + HSERO_RS02010 0.23 +0.4
439,951 + HSERO_RS02010 0.26 +0.1
439,968 - HSERO_RS02010 0.28 +0.3
439,968 - HSERO_RS02010 0.28 -0.5
439,997 - HSERO_RS02010 0.30 -0.8
440,020 + HSERO_RS02010 0.32 -0.3
440,214 - HSERO_RS02010 0.50 -0.3
440,279 + HSERO_RS02010 0.55 +0.1

Or see this region's nucleotide sequence