Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01550

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01545 and HSERO_RS01550 are separated by 107 nucleotidesHSERO_RS01550 and HSERO_RS01555 are separated by 78 nucleotides HSERO_RS01545: HSERO_RS01545 - sulfate transporter, at 340,347 to 341,837 _RS01545 HSERO_RS01550: HSERO_RS01550 - hypothetical protein, at 341,945 to 342,448 _RS01550 HSERO_RS01555: HSERO_RS01555 - RND transporter, at 342,527 to 344,041 _RS01555 Position (kb) 341 342 343Strain fitness (log2 ratio) -2 -1 0 1 2at 341.028 kb on + strand, within HSERO_RS01545at 341.064 kb on + strand, within HSERO_RS01545at 341.141 kb on + strand, within HSERO_RS01545at 341.143 kb on - strand, within HSERO_RS01545at 341.292 kb on + strand, within HSERO_RS01545at 341.341 kb on - strand, within HSERO_RS01545at 341.466 kb on + strand, within HSERO_RS01545at 341.678 kb on + strand, within HSERO_RS01545at 341.724 kb on + strandat 341.724 kb on + strandat 341.746 kb on + strandat 342.015 kb on - strand, within HSERO_RS01550at 342.056 kb on + strand, within HSERO_RS01550at 342.239 kb on - strand, within HSERO_RS01550at 342.296 kb on + strand, within HSERO_RS01550at 342.523 kb on + strandat 342.531 kb on - strandat 342.597 kb on - strandat 342.755 kb on - strand, within HSERO_RS01555at 342.755 kb on - strand, within HSERO_RS01555at 342.821 kb on + strand, within HSERO_RS01555at 342.829 kb on - strand, within HSERO_RS01555at 342.886 kb on - strand, within HSERO_RS01555at 342.928 kb on - strand, within HSERO_RS01555at 342.979 kb on - strand, within HSERO_RS01555at 343.380 kb on - strand, within HSERO_RS01555at 343.422 kb on + strandat 343.440 kb on + strand, within HSERO_RS01555

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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341,028 + HSERO_RS01545 0.46 -0.7
341,064 + HSERO_RS01545 0.48 +1.0
341,141 + HSERO_RS01545 0.53 +0.2
341,143 - HSERO_RS01545 0.53 -0.3
341,292 + HSERO_RS01545 0.63 -0.1
341,341 - HSERO_RS01545 0.67 -0.8
341,466 + HSERO_RS01545 0.75 -0.1
341,678 + HSERO_RS01545 0.89 +2.6
341,724 + -1.9
341,724 + -1.7
341,746 + +0.3
342,015 - HSERO_RS01550 0.14 +0.6
342,056 + HSERO_RS01550 0.22 +0.5
342,239 - HSERO_RS01550 0.58 +1.4
342,296 + HSERO_RS01550 0.70 +1.3
342,523 + +0.0
342,531 - +0.3
342,597 - -0.4
342,755 - HSERO_RS01555 0.15 +1.1
342,755 - HSERO_RS01555 0.15 +0.7
342,821 + HSERO_RS01555 0.19 +0.7
342,829 - HSERO_RS01555 0.20 +0.9
342,886 - HSERO_RS01555 0.24 -0.7
342,928 - HSERO_RS01555 0.26 -0.3
342,979 - HSERO_RS01555 0.30 +0.3
343,380 - HSERO_RS01555 0.56 -0.6
343,422 + +1.9
343,440 + HSERO_RS01555 0.60 +0.4

Or see this region's nucleotide sequence