Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS00965

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS00960 and HSERO_RS00965 are separated by 197 nucleotidesHSERO_RS00965 and HSERO_RS00970 are separated by 87 nucleotides HSERO_RS00960: HSERO_RS00960 - sodium:solute symporter, at 204,200 to 205,657 _RS00960 HSERO_RS00965: HSERO_RS00965 - trehalose-phosphatase, at 205,855 to 206,601 _RS00965 HSERO_RS00970: HSERO_RS00970 - glucoamylase, at 206,689 to 208,578 _RS00970 Position (kb) 205 206 207Strain fitness (log2 ratio) -1 0 1at 204.864 kb on + strand, within HSERO_RS00960at 205.325 kb on + strand, within HSERO_RS00960at 205.391 kb on - strand, within HSERO_RS00960at 205.756 kb on + strandat 205.844 kb on + strandat 205.851 kb on + strandat 205.859 kb on - strandat 205.859 kb on - strandat 205.861 kb on - strandat 206.260 kb on + strand, within HSERO_RS00965at 206.351 kb on - strandat 206.624 kb on - strandat 206.631 kb on + strandat 206.639 kb on - strandat 206.670 kb on + strandat 206.697 kb on + strandat 206.705 kb on - strandat 206.910 kb on + strand, within HSERO_RS00970at 206.918 kb on - strand, within HSERO_RS00970at 207.005 kb on + strand, within HSERO_RS00970at 207.054 kb on - strand, within HSERO_RS00970at 207.130 kb on - strand, within HSERO_RS00970

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
remove
204,864 + HSERO_RS00960 0.46 -0.0
205,325 + HSERO_RS00960 0.77 -0.3
205,391 - HSERO_RS00960 0.82 -1.4
205,756 + -0.4
205,844 + -0.1
205,851 + -0.0
205,859 - -1.0
205,859 - +0.1
205,861 - -0.5
206,260 + HSERO_RS00965 0.54 +0.7
206,351 - +1.2
206,624 - -0.5
206,631 + -1.0
206,639 - -0.7
206,670 + +0.4
206,697 + +0.3
206,705 - +0.8
206,910 + HSERO_RS00970 0.12 -1.5
206,918 - HSERO_RS00970 0.12 -0.0
207,005 + HSERO_RS00970 0.17 -0.2
207,054 - HSERO_RS00970 0.19 -0.2
207,130 - HSERO_RS00970 0.23 +0.0

Or see this region's nucleotide sequence