Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21580

Experiment: Cobalt chloride 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS21565 and BWI76_RS21570 are separated by 65 nucleotidesBWI76_RS21570 and BWI76_RS21575 overlap by 11 nucleotidesBWI76_RS21575 and BWI76_RS21580 are separated by 110 nucleotidesBWI76_RS21580 and BWI76_RS21590 are separated by 712 nucleotides BWI76_RS21565: BWI76_RS21565 - outer membrane protein assembly factor BamE, at 4,514,861 to 4,515,202 _RS21565 BWI76_RS21570: BWI76_RS21570 - RnfH family protein, at 4,515,268 to 4,515,558 _RS21570 BWI76_RS21575: BWI76_RS21575 - hypothetical protein, at 4,515,548 to 4,516,024 _RS21575 BWI76_RS21580: BWI76_RS21580 - SsrA-binding protein, at 4,516,135 to 4,516,617 _RS21580 BWI76_RS21590: BWI76_RS21590 - integrase, at 4,517,330 to 4,518,571 _RS21590 Position (kb) 4516 4517Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4515.166 kb on - strand, within BWI76_RS21565at 4515.280 kb on + strandat 4515.361 kb on - strandat 4515.402 kb on + strand, within BWI76_RS21570at 4515.489 kb on + strand, within BWI76_RS21570at 4515.558 kb on + strandat 4515.566 kb on - strandat 4515.566 kb on - strandat 4516.070 kb on - strandat 4516.131 kb on - strandat 4516.288 kb on + strand, within BWI76_RS21580at 4516.402 kb on + strand, within BWI76_RS21580at 4516.469 kb on - strand, within BWI76_RS21580at 4516.891 kb on + strandat 4516.891 kb on + strandat 4517.228 kb on + strandat 4517.228 kb on + strandat 4517.228 kb on + strandat 4517.388 kb on - strandat 4517.418 kb on + strandat 4517.418 kb on + strandat 4517.420 kb on - strandat 4517.426 kb on - strandat 4517.426 kb on - strandat 4517.426 kb on - strandat 4517.426 kb on - strandat 4517.505 kb on + strand, within BWI76_RS21590at 4517.513 kb on + strand, within BWI76_RS21590at 4517.531 kb on - strand, within BWI76_RS21590at 4517.531 kb on - strand, within BWI76_RS21590at 4517.555 kb on + strand, within BWI76_RS21590at 4517.556 kb on - strand, within BWI76_RS21590at 4517.558 kb on - strand, within BWI76_RS21590

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
remove
4,515,166 - BWI76_RS21565 0.89 -3.7
4,515,280 + +0.2
4,515,361 - +1.5
4,515,402 + BWI76_RS21570 0.46 +0.6
4,515,489 + BWI76_RS21570 0.76 +1.0
4,515,558 + -0.8
4,515,566 - +0.8
4,515,566 - -1.2
4,516,070 - -0.3
4,516,131 - +2.0
4,516,288 + BWI76_RS21580 0.32 +1.6
4,516,402 + BWI76_RS21580 0.55 +1.4
4,516,469 - BWI76_RS21580 0.69 +2.5
4,516,891 + +2.1
4,516,891 + +0.7
4,517,228 + +1.4
4,517,228 + -0.3
4,517,228 + +0.3
4,517,388 - -1.6
4,517,418 + -2.7
4,517,418 + -0.5
4,517,420 - -1.0
4,517,426 - -3.1
4,517,426 - -1.6
4,517,426 - +0.7
4,517,426 - -0.2
4,517,505 + BWI76_RS21590 0.14 -2.7
4,517,513 + BWI76_RS21590 0.15 -0.1
4,517,531 - BWI76_RS21590 0.16 -1.0
4,517,531 - BWI76_RS21590 0.16 +0.0
4,517,555 + BWI76_RS21590 0.18 -0.3
4,517,556 - BWI76_RS21590 0.18 +1.1
4,517,558 - BWI76_RS21590 0.18 +1.0

Or see this region's nucleotide sequence