Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20805

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20790 and BWI76_RS20795 are separated by 11 nucleotidesBWI76_RS20795 and BWI76_RS20800 are separated by 114 nucleotidesBWI76_RS20800 and BWI76_RS20805 are separated by 36 nucleotidesBWI76_RS20805 and BWI76_RS20810 overlap by 4 nucleotidesBWI76_RS20810 and BWI76_RS20815 overlap by 4 nucleotides BWI76_RS20790: BWI76_RS20790 - aldehyde dehydrogenase, at 4,345,900 to 4,347,303 _RS20790 BWI76_RS20795: BWI76_RS20795 - ethanolamine catabolic microcompartment shell protein EutN, at 4,347,315 to 4,347,602 _RS20795 BWI76_RS20800: BWI76_RS20800 - carboxysome shell protein, at 4,347,717 to 4,348,007 _RS20800 BWI76_RS20805: BWI76_RS20805 - phosphate acetyltransferase, at 4,348,044 to 4,349,060 _RS20805 BWI76_RS20810: BWI76_RS20810 - ethanolamine utilization cobalamin adenosyltransferase, at 4,349,057 to 4,349,860 _RS20810 BWI76_RS20815: BWI76_RS20815 - ethanolamine utilization protein EutQ, at 4,349,857 to 4,350,549 _RS20815 Position (kb) 4348 4349 4350Strain fitness (log2 ratio) -3 -2 -1 0 1at 4347.523 kb on + strand, within BWI76_RS20795at 4347.955 kb on + strand, within BWI76_RS20800at 4347.963 kb on - strand, within BWI76_RS20800at 4347.963 kb on - strand, within BWI76_RS20800at 4348.572 kb on + strand, within BWI76_RS20805at 4348.572 kb on + strand, within BWI76_RS20805at 4348.572 kb on + strand, within BWI76_RS20805at 4348.910 kb on + strand, within BWI76_RS20805at 4349.142 kb on + strand, within BWI76_RS20810at 4349.150 kb on - strand, within BWI76_RS20810at 4349.150 kb on - strand, within BWI76_RS20810at 4349.150 kb on - strand, within BWI76_RS20810at 4349.150 kb on - strand, within BWI76_RS20810at 4349.196 kb on - strand, within BWI76_RS20810at 4349.340 kb on + strand, within BWI76_RS20810at 4349.958 kb on - strand, within BWI76_RS20815at 4349.963 kb on + strand, within BWI76_RS20815at 4350.030 kb on + strand, within BWI76_RS20815at 4350.040 kb on - strand, within BWI76_RS20815

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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4,347,523 + BWI76_RS20795 0.72 -3.6
4,347,955 + BWI76_RS20800 0.82 +0.7
4,347,963 - BWI76_RS20800 0.85 -0.0
4,347,963 - BWI76_RS20800 0.85 +0.4
4,348,572 + BWI76_RS20805 0.52 -0.5
4,348,572 + BWI76_RS20805 0.52 -0.3
4,348,572 + BWI76_RS20805 0.52 -1.3
4,348,910 + BWI76_RS20805 0.85 +0.2
4,349,142 + BWI76_RS20810 0.11 +0.1
4,349,150 - BWI76_RS20810 0.12 -1.2
4,349,150 - BWI76_RS20810 0.12 +0.8
4,349,150 - BWI76_RS20810 0.12 -0.9
4,349,150 - BWI76_RS20810 0.12 -0.4
4,349,196 - BWI76_RS20810 0.17 +1.1
4,349,340 + BWI76_RS20810 0.35 +0.4
4,349,958 - BWI76_RS20815 0.15 -0.7
4,349,963 + BWI76_RS20815 0.15 -2.2
4,350,030 + BWI76_RS20815 0.25 +1.0
4,350,040 - BWI76_RS20815 0.26 +0.1

Or see this region's nucleotide sequence