Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17855

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17850 and BWI76_RS17855 overlap by 1 nucleotidesBWI76_RS17855 and BWI76_RS17860 are separated by 1 nucleotidesBWI76_RS17860 and BWI76_RS17865 are separated by 90 nucleotides BWI76_RS17850: BWI76_RS17850 - alginate lyase, at 3,710,835 to 3,712,073 _RS17850 BWI76_RS17855: BWI76_RS17855 - alginate lyase, at 3,712,073 to 3,714,103 _RS17855 BWI76_RS17860: BWI76_RS17860 - YoaH family protein, at 3,714,105 to 3,714,284 _RS17860 BWI76_RS17865: BWI76_RS17865 - aminodeoxychorismate synthase subunit I, at 3,714,375 to 3,715,730 _RS17865 Position (kb) 3712 3713 3714 3715Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3711.132 kb on + strand, within BWI76_RS17850at 3711.133 kb on - strand, within BWI76_RS17850at 3711.135 kb on - strand, within BWI76_RS17850at 3711.142 kb on + strand, within BWI76_RS17850at 3711.308 kb on + strand, within BWI76_RS17850at 3711.310 kb on - strand, within BWI76_RS17850at 3711.427 kb on - strand, within BWI76_RS17850at 3711.460 kb on - strand, within BWI76_RS17850at 3711.487 kb on + strandat 3711.541 kb on + strand, within BWI76_RS17850at 3711.756 kb on + strand, within BWI76_RS17850at 3711.831 kb on - strand, within BWI76_RS17850at 3711.848 kb on - strand, within BWI76_RS17850at 3712.068 kb on - strandat 3712.250 kb on - strandat 3712.456 kb on + strand, within BWI76_RS17855at 3712.484 kb on + strand, within BWI76_RS17855at 3712.570 kb on - strand, within BWI76_RS17855at 3712.622 kb on + strand, within BWI76_RS17855at 3712.832 kb on - strand, within BWI76_RS17855at 3712.936 kb on - strand, within BWI76_RS17855at 3713.040 kb on + strand, within BWI76_RS17855at 3713.394 kb on + strand, within BWI76_RS17855at 3713.514 kb on + strand, within BWI76_RS17855at 3713.580 kb on + strand, within BWI76_RS17855at 3713.800 kb on + strand, within BWI76_RS17855at 3714.075 kb on + strandat 3714.094 kb on - strandat 3714.194 kb on - strand, within BWI76_RS17860at 3714.261 kb on - strandat 3714.368 kb on - strandat 3714.368 kb on - strandat 3714.445 kb on + strandat 3714.452 kb on + strandat 3714.618 kb on + strand, within BWI76_RS17865at 3714.642 kb on - strand, within BWI76_RS17865at 3714.906 kb on - strand, within BWI76_RS17865at 3714.927 kb on + strand, within BWI76_RS17865at 3714.965 kb on + strand, within BWI76_RS17865at 3714.974 kb on - strand, within BWI76_RS17865at 3714.975 kb on + strand, within BWI76_RS17865

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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3,711,132 + BWI76_RS17850 0.24 -1.4
3,711,133 - BWI76_RS17850 0.24 -2.4
3,711,135 - BWI76_RS17850 0.24 +0.2
3,711,142 + BWI76_RS17850 0.25 +1.2
3,711,308 + BWI76_RS17850 0.38 +0.4
3,711,310 - BWI76_RS17850 0.38 +0.5
3,711,427 - BWI76_RS17850 0.48 -3.2
3,711,460 - BWI76_RS17850 0.50 -1.2
3,711,487 + +1.4
3,711,541 + BWI76_RS17850 0.57 +0.5
3,711,756 + BWI76_RS17850 0.74 -0.6
3,711,831 - BWI76_RS17850 0.80 -0.7
3,711,848 - BWI76_RS17850 0.82 -3.0
3,712,068 - +1.8
3,712,250 - +1.2
3,712,456 + BWI76_RS17855 0.19 -0.4
3,712,484 + BWI76_RS17855 0.20 -1.6
3,712,570 - BWI76_RS17855 0.24 -1.0
3,712,622 + BWI76_RS17855 0.27 -0.2
3,712,832 - BWI76_RS17855 0.37 -1.1
3,712,936 - BWI76_RS17855 0.42 -1.2
3,713,040 + BWI76_RS17855 0.48 -0.1
3,713,394 + BWI76_RS17855 0.65 -2.1
3,713,514 + BWI76_RS17855 0.71 -1.3
3,713,580 + BWI76_RS17855 0.74 -0.3
3,713,800 + BWI76_RS17855 0.85 -0.4
3,714,075 + +0.2
3,714,094 - -0.1
3,714,194 - BWI76_RS17860 0.49 -0.9
3,714,261 - +0.8
3,714,368 - +1.1
3,714,368 - +0.8
3,714,445 + -0.1
3,714,452 + +0.2
3,714,618 + BWI76_RS17865 0.18 +0.5
3,714,642 - BWI76_RS17865 0.20 +0.5
3,714,906 - BWI76_RS17865 0.39 -0.0
3,714,927 + BWI76_RS17865 0.41 +0.2
3,714,965 + BWI76_RS17865 0.44 -2.0
3,714,974 - BWI76_RS17865 0.44 +0.7
3,714,975 + BWI76_RS17865 0.44 +1.0

Or see this region's nucleotide sequence