Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17850

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17845 and BWI76_RS17850 are separated by 525 nucleotidesBWI76_RS17850 and BWI76_RS17855 overlap by 1 nucleotides BWI76_RS17845: BWI76_RS17845 - extracellular solute-binding protein, at 3,709,020 to 3,710,309 _RS17845 BWI76_RS17850: BWI76_RS17850 - alginate lyase, at 3,710,835 to 3,712,073 _RS17850 BWI76_RS17855: BWI76_RS17855 - alginate lyase, at 3,712,073 to 3,714,103 _RS17855 Position (kb) 3710 3711 3712 3713Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3709.953 kb on + strand, within BWI76_RS17845at 3709.961 kb on - strand, within BWI76_RS17845at 3710.027 kb on - strand, within BWI76_RS17845at 3710.108 kb on + strand, within BWI76_RS17845at 3710.116 kb on - strand, within BWI76_RS17845at 3710.214 kb on + strandat 3710.214 kb on + strandat 3710.214 kb on + strandat 3710.223 kb on + strandat 3710.230 kb on - strandat 3710.231 kb on - strandat 3710.239 kb on + strandat 3710.249 kb on + strandat 3710.249 kb on + strandat 3710.249 kb on + strandat 3710.249 kb on + strandat 3710.252 kb on - strandat 3710.252 kb on - strandat 3710.252 kb on - strandat 3710.255 kb on + strandat 3710.255 kb on + strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.257 kb on - strandat 3710.263 kb on - strandat 3710.263 kb on - strandat 3710.263 kb on - strandat 3710.263 kb on - strandat 3710.263 kb on - strandat 3710.263 kb on - strandat 3710.263 kb on - strandat 3710.263 kb on - strandat 3710.307 kb on + strandat 3710.307 kb on + strandat 3710.313 kb on - strandat 3710.385 kb on + strandat 3710.701 kb on + strandat 3710.701 kb on + strandat 3710.709 kb on - strandat 3710.818 kb on + strandat 3710.833 kb on - strandat 3710.839 kb on + strandat 3710.839 kb on + strandat 3710.839 kb on + strandat 3710.839 kb on + strandat 3710.847 kb on - strandat 3710.847 kb on - strandat 3710.847 kb on - strandat 3710.847 kb on - strandat 3710.847 kb on - strandat 3710.847 kb on - strandat 3710.848 kb on - strandat 3710.857 kb on - strandat 3710.859 kb on + strandat 3710.861 kb on + strandat 3710.867 kb on - strandat 3710.869 kb on - strandat 3710.871 kb on + strandat 3710.876 kb on + strandat 3710.876 kb on + strandat 3710.879 kb on - strandat 3710.911 kb on - strandat 3710.921 kb on - strandat 3710.923 kb on + strandat 3710.923 kb on - strandat 3711.132 kb on + strand, within BWI76_RS17850at 3711.133 kb on - strand, within BWI76_RS17850at 3711.135 kb on - strand, within BWI76_RS17850at 3711.142 kb on + strand, within BWI76_RS17850at 3711.308 kb on + strand, within BWI76_RS17850at 3711.310 kb on - strand, within BWI76_RS17850at 3711.427 kb on - strand, within BWI76_RS17850at 3711.460 kb on - strand, within BWI76_RS17850at 3711.487 kb on + strandat 3711.541 kb on + strand, within BWI76_RS17850at 3711.756 kb on + strand, within BWI76_RS17850at 3711.831 kb on - strand, within BWI76_RS17850at 3711.848 kb on - strand, within BWI76_RS17850at 3712.068 kb on - strandat 3712.250 kb on - strandat 3712.456 kb on + strand, within BWI76_RS17855at 3712.484 kb on + strand, within BWI76_RS17855at 3712.570 kb on - strand, within BWI76_RS17855at 3712.622 kb on + strand, within BWI76_RS17855at 3712.832 kb on - strand, within BWI76_RS17855at 3712.936 kb on - strand, within BWI76_RS17855at 3713.040 kb on + strand, within BWI76_RS17855

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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3,709,953 + BWI76_RS17845 0.72 -2.3
3,709,961 - BWI76_RS17845 0.73 +1.0
3,710,027 - BWI76_RS17845 0.78 -0.8
3,710,108 + BWI76_RS17845 0.84 -1.8
3,710,116 - BWI76_RS17845 0.85 -1.8
3,710,214 + +0.1
3,710,214 + -0.4
3,710,214 + -0.3
3,710,223 + +1.4
3,710,230 - -1.5
3,710,231 - -2.8
3,710,239 + -1.8
3,710,249 + -0.0
3,710,249 + -0.4
3,710,249 + +2.4
3,710,249 + +1.1
3,710,252 - -1.3
3,710,252 - +0.2
3,710,252 - -2.8
3,710,255 + -0.2
3,710,255 + -0.2
3,710,257 - +0.0
3,710,257 - -1.4
3,710,257 - -2.4
3,710,257 - -0.8
3,710,257 - -1.7
3,710,257 - -1.2
3,710,257 - -2.4
3,710,257 - +0.4
3,710,257 - +0.2
3,710,257 - +1.2
3,710,257 - +0.7
3,710,257 - -2.8
3,710,257 - -0.5
3,710,257 - -0.9
3,710,263 - -1.0
3,710,263 - +1.9
3,710,263 - -1.8
3,710,263 - -1.0
3,710,263 - +1.1
3,710,263 - +0.4
3,710,263 - +0.2
3,710,263 - -1.4
3,710,307 + -0.8
3,710,307 + +2.4
3,710,313 - -2.0
3,710,385 + -0.3
3,710,701 + -2.0
3,710,701 + -1.0
3,710,709 - -0.0
3,710,818 + +2.6
3,710,833 - +0.8
3,710,839 + -0.6
3,710,839 + +0.4
3,710,839 + -2.1
3,710,839 + +1.4
3,710,847 - +0.1
3,710,847 - +1.8
3,710,847 - -2.3
3,710,847 - +0.1
3,710,847 - -0.0
3,710,847 - -1.6
3,710,848 - -2.2
3,710,857 - -0.8
3,710,859 + +0.4
3,710,861 + -0.4
3,710,867 - +0.4
3,710,869 - -0.0
3,710,871 + -0.4
3,710,876 + +0.6
3,710,876 + -1.4
3,710,879 - -0.8
3,710,911 - +2.4
3,710,921 - -1.4
3,710,923 + +0.3
3,710,923 - -0.9
3,711,132 + BWI76_RS17850 0.24 -1.4
3,711,133 - BWI76_RS17850 0.24 -2.4
3,711,135 - BWI76_RS17850 0.24 +0.2
3,711,142 + BWI76_RS17850 0.25 +1.2
3,711,308 + BWI76_RS17850 0.38 +0.4
3,711,310 - BWI76_RS17850 0.38 +0.5
3,711,427 - BWI76_RS17850 0.48 -3.2
3,711,460 - BWI76_RS17850 0.50 -1.2
3,711,487 + +1.4
3,711,541 + BWI76_RS17850 0.57 +0.5
3,711,756 + BWI76_RS17850 0.74 -0.6
3,711,831 - BWI76_RS17850 0.80 -0.7
3,711,848 - BWI76_RS17850 0.82 -3.0
3,712,068 - +1.8
3,712,250 - +1.2
3,712,456 + BWI76_RS17855 0.19 -0.4
3,712,484 + BWI76_RS17855 0.20 -1.6
3,712,570 - BWI76_RS17855 0.24 -1.0
3,712,622 + BWI76_RS17855 0.27 -0.2
3,712,832 - BWI76_RS17855 0.37 -1.1
3,712,936 - BWI76_RS17855 0.42 -1.2
3,713,040 + BWI76_RS17855 0.48 -0.1

Or see this region's nucleotide sequence