Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15100

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15090 and BWI76_RS15095 are separated by 18 nucleotidesBWI76_RS15095 and BWI76_RS15100 are separated by 29 nucleotidesBWI76_RS15100 and BWI76_RS15105 are separated by 38 nucleotides BWI76_RS15090: BWI76_RS15090 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 3,161,173 to 3,161,958 _RS15090 BWI76_RS15095: BWI76_RS15095 - isochorismatase, at 3,161,977 to 3,162,609 _RS15095 BWI76_RS15100: BWI76_RS15100 - phenazine biosynthesis protein PhzE, at 3,162,639 to 3,164,588 _RS15100 BWI76_RS15105: BWI76_RS15105 - 4-hydroxyphenylacetate 3-monooxygenase oxygenase component, at 3,164,627 to 3,166,141 _RS15105 Position (kb) 3162 3163 3164 3165Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3161.719 kb on - strand, within BWI76_RS15090at 3161.876 kb on + strand, within BWI76_RS15090at 3161.884 kb on - strandat 3161.975 kb on - strandat 3161.991 kb on + strandat 3162.061 kb on - strand, within BWI76_RS15095at 3162.120 kb on - strandat 3162.120 kb on - strand, within BWI76_RS15095at 3162.229 kb on - strand, within BWI76_RS15095at 3162.229 kb on - strand, within BWI76_RS15095at 3162.545 kb on - strand, within BWI76_RS15095at 3162.652 kb on - strandat 3162.720 kb on - strandat 3162.766 kb on + strandat 3163.103 kb on - strand, within BWI76_RS15100at 3163.149 kb on + strand, within BWI76_RS15100at 3163.200 kb on - strandat 3163.230 kb on - strand, within BWI76_RS15100at 3163.297 kb on + strand, within BWI76_RS15100at 3163.451 kb on + strand, within BWI76_RS15100at 3163.491 kb on + strand, within BWI76_RS15100at 3163.513 kb on + strand, within BWI76_RS15100at 3163.572 kb on - strand, within BWI76_RS15100at 3163.659 kb on + strand, within BWI76_RS15100at 3163.667 kb on - strand, within BWI76_RS15100at 3163.702 kb on + strand, within BWI76_RS15100at 3163.986 kb on - strand, within BWI76_RS15100at 3163.998 kb on + strand, within BWI76_RS15100at 3164.036 kb on - strand, within BWI76_RS15100at 3164.046 kb on - strand, within BWI76_RS15100at 3164.058 kb on - strand, within BWI76_RS15100at 3164.086 kb on + strand, within BWI76_RS15100at 3164.086 kb on + strandat 3164.094 kb on - strand, within BWI76_RS15100at 3164.256 kb on + strand, within BWI76_RS15100at 3164.332 kb on - strand, within BWI76_RS15100at 3164.356 kb on - strand, within BWI76_RS15100at 3164.356 kb on - strand, within BWI76_RS15100at 3164.373 kb on - strand, within BWI76_RS15100at 3164.390 kb on - strand, within BWI76_RS15100at 3164.392 kb on + strand, within BWI76_RS15100at 3164.392 kb on + strand, within BWI76_RS15100at 3164.392 kb on + strand, within BWI76_RS15100at 3164.392 kb on + strand, within BWI76_RS15100at 3164.400 kb on - strandat 3164.400 kb on - strandat 3164.400 kb on - strandat 3164.400 kb on - strandat 3164.400 kb on - strandat 3164.402 kb on + strandat 3164.410 kb on - strandat 3164.426 kb on + strandat 3164.530 kb on + strandat 3164.535 kb on + strandat 3164.557 kb on + strandat 3164.563 kb on + strandat 3164.563 kb on + strandat 3164.565 kb on - strandat 3164.565 kb on - strandat 3164.571 kb on - strandat 3164.571 kb on - strandat 3164.571 kb on - strandat 3164.619 kb on + strandat 3164.619 kb on + strandat 3164.652 kb on - strandat 3164.675 kb on + strandat 3164.810 kb on + strand, within BWI76_RS15105at 3164.843 kb on + strand, within BWI76_RS15105at 3164.844 kb on + strand, within BWI76_RS15105at 3164.857 kb on + strand, within BWI76_RS15105at 3164.933 kb on - strand, within BWI76_RS15105at 3165.129 kb on - strand, within BWI76_RS15105at 3165.152 kb on + strand, within BWI76_RS15105at 3165.154 kb on + strand, within BWI76_RS15105at 3165.165 kb on + strand, within BWI76_RS15105at 3165.180 kb on + strand, within BWI76_RS15105at 3165.180 kb on + strand, within BWI76_RS15105at 3165.223 kb on - strand, within BWI76_RS15105at 3165.279 kb on - strand, within BWI76_RS15105at 3165.284 kb on + strand, within BWI76_RS15105at 3165.284 kb on - strand, within BWI76_RS15105at 3165.294 kb on + strand, within BWI76_RS15105at 3165.294 kb on + strand, within BWI76_RS15105at 3165.294 kb on + strand, within BWI76_RS15105at 3165.302 kb on - strand, within BWI76_RS15105at 3165.302 kb on - strand, within BWI76_RS15105at 3165.302 kb on - strand, within BWI76_RS15105at 3165.302 kb on - strand, within BWI76_RS15105at 3165.302 kb on - strand, within BWI76_RS15105at 3165.302 kb on - strand, within BWI76_RS15105at 3165.373 kb on + strandat 3165.402 kb on + strand, within BWI76_RS15105at 3165.412 kb on + strand, within BWI76_RS15105at 3165.418 kb on + strand, within BWI76_RS15105at 3165.467 kb on - strand, within BWI76_RS15105at 3165.476 kb on + strand, within BWI76_RS15105at 3165.476 kb on + strand, within BWI76_RS15105at 3165.484 kb on - strand, within BWI76_RS15105at 3165.486 kb on + strand, within BWI76_RS15105at 3165.502 kb on - strand, within BWI76_RS15105at 3165.504 kb on + strand, within BWI76_RS15105at 3165.504 kb on + strand, within BWI76_RS15105at 3165.509 kb on + strand, within BWI76_RS15105at 3165.510 kb on - strand, within BWI76_RS15105at 3165.512 kb on - strand, within BWI76_RS15105at 3165.512 kb on - strand, within BWI76_RS15105at 3165.512 kb on - strand, within BWI76_RS15105at 3165.512 kb on - strand, within BWI76_RS15105at 3165.526 kb on - strand, within BWI76_RS15105at 3165.526 kb on - strand, within BWI76_RS15105

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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3,161,719 - BWI76_RS15090 0.69 -0.1
3,161,876 + BWI76_RS15090 0.89 -0.0
3,161,884 - -0.7
3,161,975 - +1.9
3,161,991 + +0.5
3,162,061 - BWI76_RS15095 0.13 +1.2
3,162,120 - -0.5
3,162,120 - BWI76_RS15095 0.23 +0.5
3,162,229 - BWI76_RS15095 0.40 +0.2
3,162,229 - BWI76_RS15095 0.40 +0.2
3,162,545 - BWI76_RS15095 0.90 +0.0
3,162,652 - -2.2
3,162,720 - -3.8
3,162,766 + +0.4
3,163,103 - BWI76_RS15100 0.24 -1.4
3,163,149 + BWI76_RS15100 0.26 -0.5
3,163,200 - +3.5
3,163,230 - BWI76_RS15100 0.30 -2.0
3,163,297 + BWI76_RS15100 0.34 -3.2
3,163,451 + BWI76_RS15100 0.42 -1.0
3,163,491 + BWI76_RS15100 0.44 +0.8
3,163,513 + BWI76_RS15100 0.45 -3.6
3,163,572 - BWI76_RS15100 0.48 -1.1
3,163,659 + BWI76_RS15100 0.52 -2.4
3,163,667 - BWI76_RS15100 0.53 -0.7
3,163,702 + BWI76_RS15100 0.55 -1.1
3,163,986 - BWI76_RS15100 0.69 -0.1
3,163,998 + BWI76_RS15100 0.70 -2.2
3,164,036 - BWI76_RS15100 0.72 -0.5
3,164,046 - BWI76_RS15100 0.72 +0.5
3,164,058 - BWI76_RS15100 0.73 -0.6
3,164,086 + BWI76_RS15100 0.74 -0.2
3,164,086 + +0.2
3,164,094 - BWI76_RS15100 0.75 +2.5
3,164,256 + BWI76_RS15100 0.83 +1.1
3,164,332 - BWI76_RS15100 0.87 -1.1
3,164,356 - BWI76_RS15100 0.88 +0.7
3,164,356 - BWI76_RS15100 0.88 -1.7
3,164,373 - BWI76_RS15100 0.89 -0.1
3,164,390 - BWI76_RS15100 0.90 +1.3
3,164,392 + BWI76_RS15100 0.90 -2.0
3,164,392 + BWI76_RS15100 0.90 +0.2
3,164,392 + BWI76_RS15100 0.90 +1.4
3,164,392 + BWI76_RS15100 0.90 -2.1
3,164,400 - +1.2
3,164,400 - +0.6
3,164,400 - +0.1
3,164,400 - +0.7
3,164,400 - +0.5
3,164,402 + +2.5
3,164,410 - -2.8
3,164,426 + -2.1
3,164,530 + -0.0
3,164,535 + -1.2
3,164,557 + -0.4
3,164,563 + -0.0
3,164,563 + -0.3
3,164,565 - +1.8
3,164,565 - -1.8
3,164,571 - -0.3
3,164,571 - +0.9
3,164,571 - +1.4
3,164,619 + -0.0
3,164,619 + -1.9
3,164,652 - +0.7
3,164,675 + +1.6
3,164,810 + BWI76_RS15105 0.12 +1.5
3,164,843 + BWI76_RS15105 0.14 -1.2
3,164,844 + BWI76_RS15105 0.14 +1.2
3,164,857 + BWI76_RS15105 0.15 -2.2
3,164,933 - BWI76_RS15105 0.20 +0.5
3,165,129 - BWI76_RS15105 0.33 -0.2
3,165,152 + BWI76_RS15105 0.35 -0.7
3,165,154 + BWI76_RS15105 0.35 -0.7
3,165,165 + BWI76_RS15105 0.36 -1.5
3,165,180 + BWI76_RS15105 0.37 -0.7
3,165,180 + BWI76_RS15105 0.37 -1.5
3,165,223 - BWI76_RS15105 0.39 -0.3
3,165,279 - BWI76_RS15105 0.43 -1.6
3,165,284 + BWI76_RS15105 0.43 -0.2
3,165,284 - BWI76_RS15105 0.43 +3.2
3,165,294 + BWI76_RS15105 0.44 +2.0
3,165,294 + BWI76_RS15105 0.44 -0.7
3,165,294 + BWI76_RS15105 0.44 -2.1
3,165,302 - BWI76_RS15105 0.45 -1.8
3,165,302 - BWI76_RS15105 0.45 +0.3
3,165,302 - BWI76_RS15105 0.45 +1.1
3,165,302 - BWI76_RS15105 0.45 +0.6
3,165,302 - BWI76_RS15105 0.45 +0.0
3,165,302 - BWI76_RS15105 0.45 +0.5
3,165,373 + +0.2
3,165,402 + BWI76_RS15105 0.51 -1.3
3,165,412 + BWI76_RS15105 0.52 +0.6
3,165,418 + BWI76_RS15105 0.52 -1.1
3,165,467 - BWI76_RS15105 0.55 +1.1
3,165,476 + BWI76_RS15105 0.56 -0.1
3,165,476 + BWI76_RS15105 0.56 +0.1
3,165,484 - BWI76_RS15105 0.57 -0.5
3,165,486 + BWI76_RS15105 0.57 -0.3
3,165,502 - BWI76_RS15105 0.58 +0.2
3,165,504 + BWI76_RS15105 0.58 -2.8
3,165,504 + BWI76_RS15105 0.58 -1.3
3,165,509 + BWI76_RS15105 0.58 -0.2
3,165,510 - BWI76_RS15105 0.58 +0.3
3,165,512 - BWI76_RS15105 0.58 -3.2
3,165,512 - BWI76_RS15105 0.58 -1.7
3,165,512 - BWI76_RS15105 0.58 +0.5
3,165,512 - BWI76_RS15105 0.58 +0.3
3,165,526 - BWI76_RS15105 0.59 +0.4
3,165,526 - BWI76_RS15105 0.59 +0.1

Or see this region's nucleotide sequence