Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13680

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13670 and BWI76_RS13675 are separated by 189 nucleotidesBWI76_RS13675 and BWI76_RS13680 are separated by 119 nucleotidesBWI76_RS13680 and BWI76_RS13685 are separated by 4 nucleotides BWI76_RS13670: BWI76_RS13670 - NarK family nitrate/nitrite MFS transporter, at 2,852,208 to 2,853,596 _RS13670 BWI76_RS13675: BWI76_RS13675 - TetR family transcriptional regulator, at 2,853,786 to 2,854,361 _RS13675 BWI76_RS13680: BWI76_RS13680 - methyl viologen resistance protein SmvA, at 2,854,481 to 2,855,971 _RS13680 BWI76_RS13685: BWI76_RS13685 - IclR family transcriptional regulator, at 2,855,976 to 2,856,773 _RS13685 Position (kb) 2854 2855 2856Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2853.601 kb on - strandat 2853.623 kb on - strandat 2853.689 kb on - strandat 2853.693 kb on + strandat 2853.701 kb on - strandat 2853.774 kb on + strandat 2853.781 kb on - strandat 2853.782 kb on - strandat 2853.782 kb on - strandat 2853.880 kb on + strand, within BWI76_RS13675at 2853.888 kb on - strand, within BWI76_RS13675at 2853.888 kb on - strand, within BWI76_RS13675at 2853.931 kb on + strand, within BWI76_RS13675at 2853.939 kb on - strand, within BWI76_RS13675at 2853.955 kb on - strand, within BWI76_RS13675at 2853.988 kb on - strand, within BWI76_RS13675at 2853.996 kb on - strand, within BWI76_RS13675at 2854.015 kb on + strand, within BWI76_RS13675at 2854.015 kb on + strand, within BWI76_RS13675at 2854.015 kb on + strand, within BWI76_RS13675at 2854.023 kb on - strand, within BWI76_RS13675at 2854.023 kb on - strand, within BWI76_RS13675at 2854.023 kb on - strand, within BWI76_RS13675at 2854.193 kb on - strand, within BWI76_RS13675at 2854.219 kb on + strand, within BWI76_RS13675at 2854.221 kb on - strand, within BWI76_RS13675at 2854.483 kb on - strandat 2854.580 kb on - strandat 2854.586 kb on - strandat 2854.713 kb on - strand, within BWI76_RS13680at 2855.146 kb on + strand, within BWI76_RS13680at 2855.196 kb on - strand, within BWI76_RS13680at 2855.310 kb on + strand, within BWI76_RS13680at 2855.815 kb on + strand, within BWI76_RS13680at 2856.585 kb on + strand, within BWI76_RS13685at 2856.657 kb on - strand, within BWI76_RS13685

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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2,853,601 - +0.8
2,853,623 - -0.1
2,853,689 - -0.2
2,853,693 + +2.4
2,853,701 - -0.7
2,853,774 + +0.8
2,853,781 - +0.9
2,853,782 - -2.5
2,853,782 - +0.3
2,853,880 + BWI76_RS13675 0.16 +1.1
2,853,888 - BWI76_RS13675 0.18 -0.7
2,853,888 - BWI76_RS13675 0.18 +0.6
2,853,931 + BWI76_RS13675 0.25 -2.0
2,853,939 - BWI76_RS13675 0.27 -0.0
2,853,955 - BWI76_RS13675 0.29 -4.1
2,853,988 - BWI76_RS13675 0.35 -2.0
2,853,996 - BWI76_RS13675 0.36 -0.1
2,854,015 + BWI76_RS13675 0.40 -2.6
2,854,015 + BWI76_RS13675 0.40 +0.1
2,854,015 + BWI76_RS13675 0.40 -0.6
2,854,023 - BWI76_RS13675 0.41 +0.7
2,854,023 - BWI76_RS13675 0.41 +0.8
2,854,023 - BWI76_RS13675 0.41 -1.7
2,854,193 - BWI76_RS13675 0.71 +0.0
2,854,219 + BWI76_RS13675 0.75 -0.3
2,854,221 - BWI76_RS13675 0.76 +0.1
2,854,483 - -2.0
2,854,580 - +0.2
2,854,586 - +0.0
2,854,713 - BWI76_RS13680 0.16 +0.6
2,855,146 + BWI76_RS13680 0.45 +1.1
2,855,196 - BWI76_RS13680 0.48 +1.2
2,855,310 + BWI76_RS13680 0.56 +0.8
2,855,815 + BWI76_RS13680 0.89 +0.6
2,856,585 + BWI76_RS13685 0.76 -3.0
2,856,657 - BWI76_RS13685 0.85 +0.4

Or see this region's nucleotide sequence