Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12980

Experiment: Cobalt chloride 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS12975 and BWI76_RS12980 are separated by 78 nucleotidesBWI76_RS12980 and BWI76_RS12985 are separated by 195 nucleotides BWI76_RS12975: BWI76_RS12975 - type I glyceraldehyde-3-phosphate dehydrogenase, at 2,705,253 to 2,706,263 _RS12975 BWI76_RS12980: BWI76_RS12980 - AraC family transcriptional regulator, at 2,706,342 to 2,707,322 _RS12980 BWI76_RS12985: BWI76_RS12985 - transcriptional regulator, at 2,707,518 to 2,709,014 _RS12985 Position (kb) 2706 2707 2708Strain fitness (log2 ratio) -2 -1 0 1at 2705.506 kb on - strand, within BWI76_RS12975at 2705.506 kb on - strand, within BWI76_RS12975at 2705.747 kb on - strand, within BWI76_RS12975at 2705.932 kb on + strand, within BWI76_RS12975at 2706.272 kb on + strandat 2706.482 kb on + strand, within BWI76_RS12980at 2706.686 kb on + strand, within BWI76_RS12980at 2706.747 kb on + strand, within BWI76_RS12980at 2706.893 kb on - strand, within BWI76_RS12980at 2706.929 kb on + strand, within BWI76_RS12980at 2707.157 kb on + strand, within BWI76_RS12980at 2707.214 kb on + strand, within BWI76_RS12980at 2707.215 kb on - strand, within BWI76_RS12980at 2707.237 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
remove
2,705,506 - BWI76_RS12975 0.25 -1.4
2,705,506 - BWI76_RS12975 0.25 -0.1
2,705,747 - BWI76_RS12975 0.49 +1.4
2,705,932 + BWI76_RS12975 0.67 +0.4
2,706,272 + -1.3
2,706,482 + BWI76_RS12980 0.14 -2.7
2,706,686 + BWI76_RS12980 0.35 +0.7
2,706,747 + BWI76_RS12980 0.41 -1.4
2,706,893 - BWI76_RS12980 0.56 -1.3
2,706,929 + BWI76_RS12980 0.60 -1.2
2,707,157 + BWI76_RS12980 0.83 -0.2
2,707,214 + BWI76_RS12980 0.89 +0.4
2,707,215 - BWI76_RS12980 0.89 +0.2
2,707,237 - -1.9

Or see this region's nucleotide sequence