Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07915

Experiment: Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07905 and BWI76_RS07910 are separated by 157 nucleotidesBWI76_RS07910 and BWI76_RS07915 overlap by 4 nucleotidesBWI76_RS07915 and BWI76_RS07920 are separated by 173 nucleotides BWI76_RS07905: BWI76_RS07905 - trimethylamine-N-oxide reductase (cytochrome c), at 1,678,470 to 1,680,779 _RS07905 BWI76_RS07910: BWI76_RS07910 - acireductone dioxygenase, at 1,680,937 to 1,681,479 _RS07910 BWI76_RS07915: BWI76_RS07915 - acireductone synthase, at 1,681,476 to 1,682,165 _RS07915 BWI76_RS07920: BWI76_RS07920 - methionine aminotransferase, at 1,682,339 to 1,683,499 _RS07920 Position (kb) 1681 1682 1683Strain fitness (log2 ratio) -3 -2 -1 0 1at 1681.480 kb on + strandat 1681.705 kb on - strand, within BWI76_RS07915at 1681.779 kb on + strand, within BWI76_RS07915at 1681.899 kb on + strand, within BWI76_RS07915at 1681.906 kb on - strand, within BWI76_RS07915at 1682.022 kb on - strand, within BWI76_RS07915at 1682.089 kb on + strand, within BWI76_RS07915at 1682.311 kb on - strandat 1682.737 kb on + strand, within BWI76_RS07920at 1682.836 kb on + strand, within BWI76_RS07920at 1682.842 kb on + strand, within BWI76_RS07920at 1682.978 kb on + strand, within BWI76_RS07920at 1683.133 kb on + strand, within BWI76_RS07920

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.5 mM
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1,681,480 + -2.5
1,681,705 - BWI76_RS07915 0.33 -2.3
1,681,779 + BWI76_RS07915 0.44 -0.3
1,681,899 + BWI76_RS07915 0.61 -0.3
1,681,906 - BWI76_RS07915 0.62 -1.3
1,682,022 - BWI76_RS07915 0.79 -1.9
1,682,089 + BWI76_RS07915 0.89 -3.3
1,682,311 - +0.9
1,682,737 + BWI76_RS07920 0.34 -1.7
1,682,836 + BWI76_RS07920 0.43 +0.6
1,682,842 + BWI76_RS07920 0.43 -2.1
1,682,978 + BWI76_RS07920 0.55 +0.6
1,683,133 + BWI76_RS07920 0.68 -0.1

Or see this region's nucleotide sequence