Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_30095

Experiment: 4C survival; 192 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_30090 and AO356_30095 are separated by 239 nucleotidesAO356_30095 and AO356_30100 overlap by 4 nucleotidesAO356_30100 and AO356_30105 overlap by 19 nucleotides AO356_30090: AO356_30090 - XRE family transcriptional regulator, at 7,023,086 to 7,023,685 _30090 AO356_30095: AO356_30095 - formyltetrahydrofolate deformylase, at 7,023,925 to 7,024,791 _30095 AO356_30100: AO356_30100 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase, at 7,024,788 to 7,025,693 _30100 AO356_30105: AO356_30105 - sarcosine oxidase subunit beta, at 7,025,675 to 7,026,916 _30105 Position (kb) 7023 7024 7025Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 7022.959 kb on + strandat 7022.959 kb on + strandat 7022.959 kb on + strandat 7022.960 kb on - strandat 7022.960 kb on - strandat 7022.961 kb on + strandat 7022.961 kb on + strandat 7022.961 kb on + strandat 7022.962 kb on - strandat 7022.962 kb on - strandat 7022.963 kb on + strandat 7022.964 kb on - strandat 7023.085 kb on + strandat 7023.085 kb on + strandat 7023.085 kb on + strandat 7023.085 kb on + strandat 7023.085 kb on + strandat 7023.085 kb on + strandat 7023.085 kb on + strandat 7023.085 kb on + strandat 7023.086 kb on - strandat 7023.086 kb on - strandat 7023.086 kb on - strandat 7023.125 kb on + strandat 7023.126 kb on - strandat 7023.175 kb on - strand, within AO356_30090at 7023.397 kb on + strand, within AO356_30090at 7023.397 kb on + strand, within AO356_30090at 7023.397 kb on + strand, within AO356_30090at 7023.398 kb on - strand, within AO356_30090at 7023.398 kb on - strand, within AO356_30090at 7023.398 kb on - strand, within AO356_30090at 7023.401 kb on + strand, within AO356_30090at 7023.401 kb on + strand, within AO356_30090at 7023.401 kb on + strand, within AO356_30090at 7023.401 kb on + strand, within AO356_30090at 7023.402 kb on - strand, within AO356_30090at 7023.402 kb on - strand, within AO356_30090at 7023.402 kb on - strand, within AO356_30090at 7023.449 kb on + strand, within AO356_30090at 7023.449 kb on + strand, within AO356_30090at 7023.449 kb on + strand, within AO356_30090at 7023.449 kb on + strand, within AO356_30090at 7023.450 kb on - strand, within AO356_30090at 7023.450 kb on - strand, within AO356_30090at 7023.450 kb on - strand, within AO356_30090at 7023.542 kb on + strand, within AO356_30090at 7023.683 kb on + strandat 7023.684 kb on - strandat 7023.802 kb on - strandat 7023.803 kb on + strandat 7023.804 kb on - strandat 7023.804 kb on - strandat 7023.804 kb on - strandat 7023.887 kb on + strandat 7024.004 kb on - strandat 7024.024 kb on + strand, within AO356_30095at 7024.025 kb on - strand, within AO356_30095at 7024.355 kb on - strand, within AO356_30095at 7024.451 kb on - strand, within AO356_30095at 7024.451 kb on - strand, within AO356_30095at 7024.451 kb on - strand, within AO356_30095at 7024.601 kb on - strand, within AO356_30095at 7024.601 kb on - strand, within AO356_30095at 7024.666 kb on + strand, within AO356_30095at 7024.667 kb on - strand, within AO356_30095at 7024.667 kb on - strand, within AO356_30095at 7024.667 kb on - strand, within AO356_30095at 7024.667 kb on - strand, within AO356_30095at 7024.935 kb on + strandat 7024.935 kb on + strand, within AO356_30100at 7024.935 kb on + strand, within AO356_30100at 7024.935 kb on + strand, within AO356_30100at 7024.935 kb on + strand, within AO356_30100at 7024.936 kb on - strand, within AO356_30100at 7025.147 kb on - strand, within AO356_30100at 7025.147 kb on - strand, within AO356_30100at 7025.229 kb on + strand, within AO356_30100at 7025.258 kb on - strand, within AO356_30100at 7025.674 kb on + strandat 7025.688 kb on + strandat 7025.762 kb on + strandat 7025.763 kb on - strandat 7025.763 kb on - strandat 7025.770 kb on - strandat 7025.770 kb on - strandat 7025.770 kb on - strandat 7025.770 kb on - strandat 7025.770 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 192 hrs
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7,022,959 + +0.2
7,022,959 + -0.1
7,022,959 + -0.7
7,022,960 - +0.6
7,022,960 - +0.9
7,022,961 + +0.9
7,022,961 + +0.1
7,022,961 + -0.9
7,022,962 - +0.5
7,022,962 - +0.7
7,022,963 + -0.1
7,022,964 - +0.3
7,023,085 + +0.1
7,023,085 + +0.3
7,023,085 + -0.9
7,023,085 + -0.4
7,023,085 + -1.4
7,023,085 + -0.3
7,023,085 + +0.1
7,023,085 + -0.1
7,023,086 - -0.5
7,023,086 - +1.3
7,023,086 - -1.0
7,023,125 + +1.2
7,023,126 - -0.5
7,023,175 - AO356_30090 0.15 +0.1
7,023,397 + AO356_30090 0.52 -0.5
7,023,397 + AO356_30090 0.52 +0.5
7,023,397 + AO356_30090 0.52 +0.5
7,023,398 - AO356_30090 0.52 +1.2
7,023,398 - AO356_30090 0.52 -0.4
7,023,398 - AO356_30090 0.52 -1.2
7,023,401 + AO356_30090 0.53 -1.0
7,023,401 + AO356_30090 0.53 +0.6
7,023,401 + AO356_30090 0.53 -0.8
7,023,401 + AO356_30090 0.53 -2.8
7,023,402 - AO356_30090 0.53 +1.0
7,023,402 - AO356_30090 0.53 -0.5
7,023,402 - AO356_30090 0.53 -0.2
7,023,449 + AO356_30090 0.60 +0.6
7,023,449 + AO356_30090 0.60 -0.4
7,023,449 + AO356_30090 0.60 -2.3
7,023,449 + AO356_30090 0.60 -0.8
7,023,450 - AO356_30090 0.61 +1.3
7,023,450 - AO356_30090 0.61 -1.8
7,023,450 - AO356_30090 0.61 -0.6
7,023,542 + AO356_30090 0.76 -0.3
7,023,683 + +0.2
7,023,684 - -2.0
7,023,802 - +0.5
7,023,803 + +0.4
7,023,804 - +0.4
7,023,804 - +0.8
7,023,804 - -0.1
7,023,887 + +1.8
7,024,004 - +0.1
7,024,024 + AO356_30095 0.11 -0.6
7,024,025 - AO356_30095 0.12 -0.5
7,024,355 - AO356_30095 0.50 +0.2
7,024,451 - AO356_30095 0.61 -0.5
7,024,451 - AO356_30095 0.61 -0.3
7,024,451 - AO356_30095 0.61 -0.8
7,024,601 - AO356_30095 0.78 +0.3
7,024,601 - AO356_30095 0.78 +0.6
7,024,666 + AO356_30095 0.85 +0.7
7,024,667 - AO356_30095 0.86 -0.6
7,024,667 - AO356_30095 0.86 +0.6
7,024,667 - AO356_30095 0.86 -0.2
7,024,667 - AO356_30095 0.86 +0.2
7,024,935 + +1.8
7,024,935 + AO356_30100 0.16 +0.3
7,024,935 + AO356_30100 0.16 -0.5
7,024,935 + AO356_30100 0.16 -0.1
7,024,935 + AO356_30100 0.16 +0.3
7,024,936 - AO356_30100 0.16 +0.4
7,025,147 - AO356_30100 0.40 -0.0
7,025,147 - AO356_30100 0.40 +0.2
7,025,229 + AO356_30100 0.49 -0.3
7,025,258 - AO356_30100 0.52 +0.6
7,025,674 + -1.3
7,025,688 + -0.1
7,025,762 + +1.8
7,025,763 - -0.5
7,025,763 - -0.0
7,025,770 - -1.2
7,025,770 - +0.7
7,025,770 - +0.3
7,025,770 - +0.3
7,025,770 - +0.7

Or see this region's nucleotide sequence