Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26045

Experiment: 4C survival; 192 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26035 and AO356_26040 are separated by 85 nucleotidesAO356_26040 and AO356_26045 overlap by 1 nucleotidesAO356_26045 and AO356_26050 are separated by 271 nucleotides AO356_26035: AO356_26035 - alpha/beta hydrolase, at 5,891,191 to 5,892,222 _26035 AO356_26040: AO356_26040 - hypothetical protein, at 5,892,308 to 5,892,742 _26040 AO356_26045: AO356_26045 - metal-binding protein, at 5,892,742 to 5,893,188 _26045 AO356_26050: AO356_26050 - chemotaxis protein, at 5,893,460 to 5,895,454 _26050 Position (kb) 5892 5893 5894Strain fitness (log2 ratio) -2 -1 0 1at 5891.803 kb on + strand, within AO356_26035at 5891.858 kb on + strand, within AO356_26035at 5891.864 kb on + strand, within AO356_26035at 5891.864 kb on + strand, within AO356_26035at 5892.036 kb on + strand, within AO356_26035at 5892.036 kb on + strand, within AO356_26035at 5892.037 kb on - strand, within AO356_26035at 5892.038 kb on + strand, within AO356_26035at 5892.038 kb on + strand, within AO356_26035at 5892.039 kb on - strand, within AO356_26035at 5892.039 kb on - strand, within AO356_26035at 5892.039 kb on - strand, within AO356_26035at 5892.039 kb on - strand, within AO356_26035at 5892.039 kb on - strand, within AO356_26035at 5892.091 kb on - strand, within AO356_26035at 5892.092 kb on + strand, within AO356_26035at 5892.092 kb on + strand, within AO356_26035at 5892.487 kb on - strand, within AO356_26040at 5892.729 kb on + strandat 5892.729 kb on + strandat 5892.729 kb on + strandat 5892.730 kb on - strandat 5892.806 kb on + strand, within AO356_26045at 5893.233 kb on + strandat 5893.298 kb on + strandat 5893.299 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 192 hrs
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5,891,803 + AO356_26035 0.59 +0.2
5,891,858 + AO356_26035 0.65 -0.1
5,891,864 + AO356_26035 0.65 -0.8
5,891,864 + AO356_26035 0.65 +0.5
5,892,036 + AO356_26035 0.82 +1.7
5,892,036 + AO356_26035 0.82 -0.8
5,892,037 - AO356_26035 0.82 -0.9
5,892,038 + AO356_26035 0.82 -0.6
5,892,038 + AO356_26035 0.82 -0.5
5,892,039 - AO356_26035 0.82 +0.3
5,892,039 - AO356_26035 0.82 +0.1
5,892,039 - AO356_26035 0.82 +0.9
5,892,039 - AO356_26035 0.82 +0.1
5,892,039 - AO356_26035 0.82 +0.0
5,892,091 - AO356_26035 0.87 -2.0
5,892,092 + AO356_26035 0.87 -0.2
5,892,092 + AO356_26035 0.87 +0.7
5,892,487 - AO356_26040 0.41 -0.8
5,892,729 + -0.5
5,892,729 + -0.2
5,892,729 + -0.5
5,892,730 - +0.7
5,892,806 + AO356_26045 0.14 +1.3
5,893,233 + +0.8
5,893,298 + -0.3
5,893,299 - -1.2

Or see this region's nucleotide sequence