Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24855

Experiment: 4C survival; 192 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24845 and AO356_24850 overlap by 4 nucleotidesAO356_24850 and AO356_24855 are separated by 225 nucleotidesAO356_24855 and AO356_24860 are separated by 168 nucleotides AO356_24845: AO356_24845 - ATPase, at 5,630,735 to 5,632,045 _24845 AO356_24850: AO356_24850 - chemotaxis protein CheY, at 5,632,042 to 5,632,782 _24850 AO356_24855: AO356_24855 - hypothetical protein, at 5,633,008 to 5,633,271 _24855 AO356_24860: AO356_24860 - cytochrome C biogenesis protein, at 5,633,440 to 5,634,648 _24860 Position (kb) 5633 5634Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5632.045 kb on + strandat 5632.112 kb on + strandat 5632.216 kb on - strand, within AO356_24850at 5632.261 kb on + strand, within AO356_24850at 5632.262 kb on - strand, within AO356_24850at 5632.475 kb on + strand, within AO356_24850at 5632.476 kb on - strand, within AO356_24850at 5632.715 kb on + strandat 5632.854 kb on + strandat 5632.864 kb on + strandat 5632.982 kb on - strandat 5633.104 kb on + strand, within AO356_24855at 5633.105 kb on - strand, within AO356_24855at 5633.105 kb on - strand, within AO356_24855at 5633.105 kb on - strand, within AO356_24855at 5633.105 kb on - strand, within AO356_24855at 5633.105 kb on - strand, within AO356_24855at 5633.110 kb on + strand, within AO356_24855at 5633.110 kb on + strand, within AO356_24855at 5633.338 kb on + strandat 5633.339 kb on - strandat 5633.410 kb on + strandat 5633.411 kb on - strandat 5633.411 kb on - strandat 5633.411 kb on - strandat 5633.424 kb on - strandat 5633.424 kb on - strandat 5633.424 kb on - strandat 5634.154 kb on + strand, within AO356_24860at 5634.155 kb on - strand, within AO356_24860at 5634.155 kb on - strand, within AO356_24860at 5634.155 kb on - strand, within AO356_24860

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 192 hrs
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5,632,045 + +0.1
5,632,112 + +2.0
5,632,216 - AO356_24850 0.23 -0.6
5,632,261 + AO356_24850 0.30 +0.4
5,632,262 - AO356_24850 0.30 -0.3
5,632,475 + AO356_24850 0.58 -1.3
5,632,476 - AO356_24850 0.59 +0.2
5,632,715 + -2.8
5,632,854 + +0.3
5,632,864 + +0.2
5,632,982 - +0.1
5,633,104 + AO356_24855 0.36 -0.0
5,633,105 - AO356_24855 0.37 +0.2
5,633,105 - AO356_24855 0.37 -0.3
5,633,105 - AO356_24855 0.37 +0.2
5,633,105 - AO356_24855 0.37 -0.8
5,633,105 - AO356_24855 0.37 -0.1
5,633,110 + AO356_24855 0.39 +0.3
5,633,110 + AO356_24855 0.39 -0.3
5,633,338 + -0.6
5,633,339 - -1.3
5,633,410 + +0.4
5,633,411 - -0.9
5,633,411 - -0.7
5,633,411 - +0.2
5,633,424 - -1.2
5,633,424 - -1.3
5,633,424 - -0.4
5,634,154 + AO356_24860 0.59 +0.6
5,634,155 - AO356_24860 0.59 +0.7
5,634,155 - AO356_24860 0.59 -0.2
5,634,155 - AO356_24860 0.59 +1.0

Or see this region's nucleotide sequence