Experiment: 4C survival; 192 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21000 and AO356_21005 are separated by 153 nucleotides AO356_21005 and AO356_21010 are separated by 118 nucleotides AO356_21010 and AO356_21015 are separated by 154 nucleotides AO356_21015 and AO356_21020 are separated by 464 nucleotides
AO356_21000: AO356_21000 - 23S ribosomal RNA, at 4,672,727 to 4,675,642
_21000
AO356_21005: AO356_21005 - 5S ribosomal RNA, at 4,675,796 to 4,675,911
_21005
AO356_21010: AO356_21010 - urease-associated protein, at 4,676,030 to 4,676,431
_21010
AO356_21015: AO356_21015 - vanillate O-demethylase oxidoreductase VanB, at 4,676,586 to 4,677,044
_21015
AO356_21020: AO356_21020 - hypothetical protein, at 4,677,509 to 4,677,970
_21020
Position (kb) 4676
4677
4678 Strain fitness (log2 ratio) -2
-1
0
1 at 4675.870 kb on + strand, within AO356_21005 at 4675.968 kb on + strand at 4676.079 kb on + strand, within AO356_21010 at 4676.079 kb on + strand, within AO356_21010 at 4676.079 kb on + strand, within AO356_21010 at 4676.080 kb on - strand, within AO356_21010 at 4676.080 kb on - strand, within AO356_21010 at 4676.080 kb on - strand, within AO356_21010 at 4676.080 kb on - strand, within AO356_21010 at 4676.080 kb on - strand, within AO356_21010 at 4676.080 kb on - strand, within AO356_21010 at 4676.133 kb on + strand, within AO356_21010 at 4676.133 kb on + strand, within AO356_21010 at 4676.133 kb on + strand, within AO356_21010 at 4676.134 kb on - strand, within AO356_21010 at 4676.146 kb on - strand, within AO356_21010 at 4676.146 kb on - strand, within AO356_21010 at 4676.280 kb on + strand, within AO356_21010 at 4676.280 kb on + strand, within AO356_21010 at 4676.280 kb on + strand, within AO356_21010 at 4676.280 kb on + strand, within AO356_21010 at 4676.281 kb on - strand, within AO356_21010 at 4676.281 kb on - strand, within AO356_21010 at 4676.350 kb on + strand, within AO356_21010 at 4676.350 kb on + strand, within AO356_21010 at 4676.350 kb on + strand, within AO356_21010 at 4676.350 kb on + strand, within AO356_21010 at 4676.350 kb on + strand, within AO356_21010 at 4676.351 kb on - strand, within AO356_21010 at 4676.351 kb on - strand, within AO356_21010 at 4676.424 kb on - strand at 4676.473 kb on + strand at 4676.473 kb on + strand at 4676.473 kb on + strand at 4676.474 kb on - strand at 4676.474 kb on - strand at 4676.524 kb on + strand at 4676.525 kb on - strand at 4676.525 kb on - strand at 4676.552 kb on + strand at 4676.552 kb on + strand at 4676.552 kb on + strand at 4676.553 kb on - strand at 4676.553 kb on - strand at 4676.553 kb on - strand at 4676.553 kb on - strand at 4676.560 kb on + strand at 4676.560 kb on + strand at 4676.560 kb on + strand at 4676.561 kb on - strand at 4676.730 kb on - strand, within AO356_21015 at 4676.744 kb on + strand, within AO356_21015 at 4676.744 kb on + strand, within AO356_21015 at 4676.744 kb on + strand, within AO356_21015 at 4676.744 kb on + strand, within AO356_21015 at 4676.745 kb on - strand, within AO356_21015 at 4676.745 kb on - strand, within AO356_21015 at 4676.745 kb on - strand, within AO356_21015 at 4676.748 kb on + strand, within AO356_21015 at 4676.749 kb on - strand, within AO356_21015 at 4676.768 kb on + strand, within AO356_21015 at 4676.769 kb on - strand, within AO356_21015 at 4676.769 kb on - strand, within AO356_21015 at 4676.769 kb on - strand, within AO356_21015 at 4676.832 kb on + strand, within AO356_21015 at 4676.833 kb on - strand, within AO356_21015 at 4676.851 kb on + strand, within AO356_21015 at 4676.851 kb on + strand, within AO356_21015 at 4676.851 kb on + strand, within AO356_21015 at 4676.851 kb on + strand, within AO356_21015 at 4676.857 kb on - strand, within AO356_21015 at 4676.857 kb on - strand, within AO356_21015 at 4676.912 kb on + strand, within AO356_21015 at 4677.017 kb on + strand at 4677.017 kb on + strand at 4677.064 kb on + strand at 4677.064 kb on + strand at 4677.064 kb on + strand at 4677.064 kb on + strand at 4677.065 kb on - strand at 4677.065 kb on - strand at 4677.086 kb on + strand at 4677.086 kb on + strand at 4677.087 kb on - strand at 4677.088 kb on + strand at 4677.089 kb on - strand at 4677.100 kb on + strand at 4677.101 kb on - strand at 4677.112 kb on + strand at 4677.112 kb on + strand at 4677.113 kb on - strand at 4677.113 kb on - strand at 4677.116 kb on + strand at 4677.116 kb on + strand at 4677.116 kb on + strand at 4677.116 kb on + strand at 4677.116 kb on + strand at 4677.116 kb on + strand at 4677.117 kb on - strand at 4677.117 kb on - strand at 4677.117 kb on - strand at 4677.117 kb on - strand at 4677.117 kb on - strand at 4677.117 kb on - strand at 4677.117 kb on - strand at 4677.117 kb on - strand at 4677.149 kb on - strand at 4677.149 kb on - strand at 4677.159 kb on + strand at 4677.159 kb on + strand at 4677.215 kb on + strand at 4677.215 kb on + strand at 4677.216 kb on - strand at 4677.216 kb on - strand at 4677.216 kb on - strand at 4677.302 kb on + strand at 4677.303 kb on - strand at 4677.303 kb on - strand at 4677.303 kb on - strand at 4677.316 kb on + strand at 4677.369 kb on + strand at 4677.369 kb on + strand at 4677.369 kb on + strand at 4677.369 kb on + strand at 4677.370 kb on - strand at 4677.370 kb on - strand at 4677.370 kb on - strand at 4677.370 kb on - strand at 4677.370 kb on - strand at 4677.370 kb on - strand at 4677.387 kb on - strand at 4677.471 kb on + strand at 4677.472 kb on - strand at 4677.492 kb on - strand at 4677.574 kb on + strand, within AO356_21020 at 4677.575 kb on - strand, within AO356_21020 at 4677.575 kb on - strand, within AO356_21020 at 4677.617 kb on - strand, within AO356_21020 at 4677.617 kb on - strand, within AO356_21020 at 4677.659 kb on - strand, within AO356_21020 at 4677.861 kb on + strand, within AO356_21020 at 4677.940 kb on + strand at 4677.988 kb on + strand at 4677.989 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 192 hrs remove 4,675,870 + AO356_21005 0.64 +0.4 4,675,968 + +0.9 4,676,079 + AO356_21010 0.12 +0.2 4,676,079 + AO356_21010 0.12 -1.3 4,676,079 + AO356_21010 0.12 +0.4 4,676,080 - AO356_21010 0.12 -0.3 4,676,080 - AO356_21010 0.12 +0.3 4,676,080 - AO356_21010 0.12 -1.5 4,676,080 - AO356_21010 0.12 +1.5 4,676,080 - AO356_21010 0.12 +0.3 4,676,080 - AO356_21010 0.12 -1.1 4,676,133 + AO356_21010 0.26 -0.3 4,676,133 + AO356_21010 0.26 +0.2 4,676,133 + AO356_21010 0.26 -0.3 4,676,134 - AO356_21010 0.26 +0.5 4,676,146 - AO356_21010 0.29 +0.1 4,676,146 - AO356_21010 0.29 -0.0 4,676,280 + AO356_21010 0.62 +0.1 4,676,280 + AO356_21010 0.62 +0.5 4,676,280 + AO356_21010 0.62 -0.2 4,676,280 + AO356_21010 0.62 +0.2 4,676,281 - AO356_21010 0.62 +1.1 4,676,281 - AO356_21010 0.62 -0.2 4,676,350 + AO356_21010 0.80 +0.5 4,676,350 + AO356_21010 0.80 -0.5 4,676,350 + AO356_21010 0.80 +0.8 4,676,350 + AO356_21010 0.80 +0.5 4,676,350 + AO356_21010 0.80 -0.3 4,676,351 - AO356_21010 0.80 +0.6 4,676,351 - AO356_21010 0.80 -0.0 4,676,424 - +1.1 4,676,473 + +0.4 4,676,473 + -0.8 4,676,473 + -0.2 4,676,474 - +0.2 4,676,474 - -0.6 4,676,524 + +0.7 4,676,525 - -0.4 4,676,525 - +0.8 4,676,552 + +0.6 4,676,552 + -0.2 4,676,552 + -0.6 4,676,553 - -0.8 4,676,553 - +0.5 4,676,553 - -0.2 4,676,553 - -0.3 4,676,560 + +1.1 4,676,560 + -0.3 4,676,560 + +0.6 4,676,561 - -0.6 4,676,730 - AO356_21015 0.31 -0.8 4,676,744 + AO356_21015 0.34 +0.5 4,676,744 + AO356_21015 0.34 +0.9 4,676,744 + AO356_21015 0.34 -1.1 4,676,744 + AO356_21015 0.34 -0.9 4,676,745 - AO356_21015 0.35 -0.5 4,676,745 - AO356_21015 0.35 +0.1 4,676,745 - AO356_21015 0.35 +0.9 4,676,748 + AO356_21015 0.35 +1.4 4,676,749 - AO356_21015 0.36 -0.5 4,676,768 + AO356_21015 0.40 +0.5 4,676,769 - AO356_21015 0.40 +0.6 4,676,769 - AO356_21015 0.40 -0.4 4,676,769 - AO356_21015 0.40 -0.1 4,676,832 + AO356_21015 0.54 -0.0 4,676,833 - AO356_21015 0.54 +0.0 4,676,851 + AO356_21015 0.58 +0.1 4,676,851 + AO356_21015 0.58 -0.3 4,676,851 + AO356_21015 0.58 +0.4 4,676,851 + AO356_21015 0.58 -0.3 4,676,857 - AO356_21015 0.59 -1.1 4,676,857 - AO356_21015 0.59 +0.9 4,676,912 + AO356_21015 0.71 -0.1 4,677,017 + -0.3 4,677,017 + +0.3 4,677,064 + -0.4 4,677,064 + +0.3 4,677,064 + -0.8 4,677,064 + +1.2 4,677,065 - -1.9 4,677,065 - -0.0 4,677,086 + -0.7 4,677,086 + -0.3 4,677,087 - -0.9 4,677,088 + +0.5 4,677,089 - -0.5 4,677,100 + +1.5 4,677,101 - +0.4 4,677,112 + +0.2 4,677,112 + -0.1 4,677,113 - -0.0 4,677,113 - +0.0 4,677,116 + +1.1 4,677,116 + -0.2 4,677,116 + +0.1 4,677,116 + -0.2 4,677,116 + +0.5 4,677,116 + +0.6 4,677,117 - +0.9 4,677,117 - -0.9 4,677,117 - +0.3 4,677,117 - -0.7 4,677,117 - +0.9 4,677,117 - +0.1 4,677,117 - +0.6 4,677,117 - +0.2 4,677,149 - -0.5 4,677,149 - -0.2 4,677,159 + -1.0 4,677,159 + +0.4 4,677,215 + -0.7 4,677,215 + +1.2 4,677,216 - -2.1 4,677,216 - -0.0 4,677,216 - -0.5 4,677,302 + -0.0 4,677,303 - -0.5 4,677,303 - -0.5 4,677,303 - -0.3 4,677,316 + +0.8 4,677,369 + +0.5 4,677,369 + +1.5 4,677,369 + -0.2 4,677,369 + -0.5 4,677,370 - -0.5 4,677,370 - +0.1 4,677,370 - -0.0 4,677,370 - -0.3 4,677,370 - +0.5 4,677,370 - -1.6 4,677,387 - -0.7 4,677,471 + +0.6 4,677,472 - +0.1 4,677,492 - -0.7 4,677,574 + AO356_21020 0.14 -0.3 4,677,575 - AO356_21020 0.14 -0.0 4,677,575 - AO356_21020 0.14 -0.2 4,677,617 - AO356_21020 0.23 +1.3 4,677,617 - AO356_21020 0.23 -0.7 4,677,659 - AO356_21020 0.32 -1.0 4,677,861 + AO356_21020 0.76 -0.2 4,677,940 + +0.1 4,677,988 + +0.2 4,677,989 - -0.6
Or see this region's nucleotide sequence