Experiment: 4C survival; 192 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_20440 and AO356_20445 are separated by 104 nucleotides AO356_20445 and AO356_20450 are separated by 262 nucleotides AO356_20450 and AO356_20455 are separated by 63 nucleotides
AO356_20440: AO356_20440 - integrase, at 4,564,559 to 4,565,764
_20440
AO356_20445: AO356_20445 - hypothetical protein, at 4,565,869 to 4,566,078
_20445
AO356_20450: AO356_20450 - hypothetical protein, at 4,566,341 to 4,566,679
_20450
AO356_20455: AO356_20455 - toprim domain protein, at 4,566,743 to 4,569,310
_20455
Position (kb)
4566
4567 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4565.411 kb on + strand, within AO356_20440 at 4565.411 kb on + strand, within AO356_20440 at 4565.412 kb on - strand, within AO356_20440 at 4565.412 kb on - strand, within AO356_20440 at 4565.456 kb on + strand, within AO356_20440 at 4565.456 kb on + strand, within AO356_20440 at 4565.479 kb on + strand, within AO356_20440 at 4565.479 kb on + strand, within AO356_20440 at 4565.479 kb on + strand, within AO356_20440 at 4565.479 kb on + strand, within AO356_20440 at 4565.479 kb on + strand, within AO356_20440 at 4565.479 kb on + strand, within AO356_20440 at 4565.479 kb on + strand, within AO356_20440 at 4565.480 kb on - strand, within AO356_20440 at 4565.480 kb on - strand, within AO356_20440 at 4565.480 kb on - strand, within AO356_20440 at 4565.480 kb on - strand, within AO356_20440 at 4565.480 kb on - strand, within AO356_20440 at 4565.480 kb on - strand, within AO356_20440 at 4565.480 kb on - strand, within AO356_20440 at 4565.542 kb on - strand, within AO356_20440 at 4565.605 kb on + strand, within AO356_20440 at 4565.605 kb on + strand, within AO356_20440 at 4565.605 kb on + strand, within AO356_20440 at 4565.606 kb on - strand, within AO356_20440 at 4565.623 kb on - strand, within AO356_20440 at 4565.671 kb on + strand at 4565.671 kb on + strand at 4565.671 kb on + strand at 4565.672 kb on - strand at 4565.672 kb on - strand at 4565.672 kb on - strand at 4565.672 kb on - strand at 4565.674 kb on + strand at 4565.710 kb on + strand at 4565.722 kb on - strand at 4565.722 kb on - strand at 4565.764 kb on + strand at 4565.765 kb on - strand at 4565.783 kb on + strand at 4565.783 kb on + strand at 4565.783 kb on + strand at 4565.783 kb on + strand at 4565.784 kb on - strand at 4565.784 kb on - strand at 4565.784 kb on - strand at 4565.784 kb on - strand at 4565.784 kb on - strand at 4565.784 kb on - strand at 4565.784 kb on - strand at 4565.856 kb on + strand at 4565.856 kb on + strand at 4565.856 kb on + strand at 4565.856 kb on + strand at 4565.856 kb on + strand at 4565.857 kb on - strand at 4565.857 kb on - strand at 4565.979 kb on + strand, within AO356_20445 at 4565.979 kb on + strand, within AO356_20445 at 4565.979 kb on + strand, within AO356_20445 at 4565.990 kb on + strand, within AO356_20445 at 4565.990 kb on + strand, within AO356_20445 at 4565.991 kb on - strand, within AO356_20445 at 4566.066 kb on + strand at 4566.067 kb on - strand at 4566.067 kb on - strand at 4566.106 kb on - strand at 4566.120 kb on + strand at 4566.120 kb on + strand at 4566.121 kb on - strand at 4566.121 kb on - strand at 4566.191 kb on + strand at 4566.192 kb on - strand at 4566.192 kb on - strand at 4566.243 kb on + strand at 4566.244 kb on - strand at 4566.335 kb on + strand at 4566.393 kb on + strand, within AO356_20450 at 4566.498 kb on + strand, within AO356_20450 at 4566.514 kb on - strand, within AO356_20450 at 4566.514 kb on - strand, within AO356_20450 at 4566.514 kb on - strand, within AO356_20450 at 4566.514 kb on - strand, within AO356_20450 at 4566.536 kb on + strand, within AO356_20450 at 4566.536 kb on + strand, within AO356_20450 at 4566.537 kb on - strand, within AO356_20450 at 4566.587 kb on + strand, within AO356_20450 at 4566.588 kb on - strand, within AO356_20450 at 4566.588 kb on - strand, within AO356_20450 at 4566.659 kb on + strand at 4566.659 kb on + strand at 4566.659 kb on + strand at 4566.659 kb on + strand at 4566.660 kb on - strand at 4566.660 kb on - strand at 4566.660 kb on - strand at 4566.660 kb on - strand at 4566.728 kb on + strand at 4566.744 kb on + strand at 4566.744 kb on + strand at 4566.744 kb on + strand at 4566.787 kb on + strand at 4566.831 kb on + strand at 4566.831 kb on + strand at 4566.831 kb on + strand at 4566.831 kb on + strand at 4566.832 kb on - strand at 4566.871 kb on + strand at 4567.114 kb on + strand, within AO356_20455 at 4567.115 kb on - strand, within AO356_20455 at 4567.184 kb on - strand, within AO356_20455 at 4567.482 kb on + strand, within AO356_20455 at 4567.482 kb on + strand, within AO356_20455 at 4567.483 kb on - strand, within AO356_20455
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 192 hrs remove 4,565,411 + AO356_20440 0.71 +1.2 4,565,411 + AO356_20440 0.71 -0.0 4,565,412 - AO356_20440 0.71 -0.4 4,565,412 - AO356_20440 0.71 -1.5 4,565,456 + AO356_20440 0.74 +0.3 4,565,456 + AO356_20440 0.74 -0.0 4,565,479 + AO356_20440 0.76 +0.1 4,565,479 + AO356_20440 0.76 -0.2 4,565,479 + AO356_20440 0.76 +0.3 4,565,479 + AO356_20440 0.76 +0.7 4,565,479 + AO356_20440 0.76 +0.3 4,565,479 + AO356_20440 0.76 +0.2 4,565,479 + AO356_20440 0.76 -0.7 4,565,480 - AO356_20440 0.76 +0.5 4,565,480 - AO356_20440 0.76 +1.1 4,565,480 - AO356_20440 0.76 +1.4 4,565,480 - AO356_20440 0.76 +0.3 4,565,480 - AO356_20440 0.76 -0.2 4,565,480 - AO356_20440 0.76 -0.9 4,565,480 - AO356_20440 0.76 +0.1 4,565,542 - AO356_20440 0.82 +0.3 4,565,605 + AO356_20440 0.87 +0.6 4,565,605 + AO356_20440 0.87 -0.5 4,565,605 + AO356_20440 0.87 -1.3 4,565,606 - AO356_20440 0.87 -0.9 4,565,623 - AO356_20440 0.88 +0.1 4,565,671 + +0.6 4,565,671 + -0.2 4,565,671 + -0.5 4,565,672 - +0.2 4,565,672 - +0.7 4,565,672 - -0.6 4,565,672 - -0.5 4,565,674 + -0.5 4,565,710 + +0.1 4,565,722 - +0.2 4,565,722 - +1.1 4,565,764 + +0.5 4,565,765 - +0.5 4,565,783 + -0.6 4,565,783 + +0.2 4,565,783 + -0.2 4,565,783 + +0.4 4,565,784 - -1.6 4,565,784 - +0.1 4,565,784 - -0.2 4,565,784 - +0.2 4,565,784 - +0.8 4,565,784 - -0.1 4,565,784 - +0.1 4,565,856 + +0.3 4,565,856 + -0.3 4,565,856 + -0.6 4,565,856 + +0.7 4,565,856 + +1.4 4,565,857 - +0.1 4,565,857 - +0.6 4,565,979 + AO356_20445 0.52 +0.2 4,565,979 + AO356_20445 0.52 -0.9 4,565,979 + AO356_20445 0.52 +0.2 4,565,990 + AO356_20445 0.58 +0.1 4,565,990 + AO356_20445 0.58 -1.3 4,565,991 - AO356_20445 0.58 -0.3 4,566,066 + -2.2 4,566,067 - +0.5 4,566,067 - +0.6 4,566,106 - +0.2 4,566,120 + +0.4 4,566,120 + +0.9 4,566,121 - +1.2 4,566,121 - +0.4 4,566,191 + +0.1 4,566,192 - +0.7 4,566,192 - +0.2 4,566,243 + +1.0 4,566,244 - -0.7 4,566,335 + -0.3 4,566,393 + AO356_20450 0.15 +0.8 4,566,498 + AO356_20450 0.46 +1.1 4,566,514 - AO356_20450 0.51 -0.7 4,566,514 - AO356_20450 0.51 -0.3 4,566,514 - AO356_20450 0.51 -0.9 4,566,514 - AO356_20450 0.51 -0.8 4,566,536 + AO356_20450 0.58 -0.2 4,566,536 + AO356_20450 0.58 +1.4 4,566,537 - AO356_20450 0.58 -2.4 4,566,587 + AO356_20450 0.73 +0.5 4,566,588 - AO356_20450 0.73 -0.4 4,566,588 - AO356_20450 0.73 -0.5 4,566,659 + -0.1 4,566,659 + +0.4 4,566,659 + -0.5 4,566,659 + +0.5 4,566,660 - -0.4 4,566,660 - -1.0 4,566,660 - -0.2 4,566,660 - -2.6 4,566,728 + +0.6 4,566,744 + -0.8 4,566,744 + -0.2 4,566,744 + -0.7 4,566,787 + +0.1 4,566,831 + -0.0 4,566,831 + -0.6 4,566,831 + +0.5 4,566,831 + +0.3 4,566,832 - +1.1 4,566,871 + +0.1 4,567,114 + AO356_20455 0.14 +0.1 4,567,115 - AO356_20455 0.14 -1.2 4,567,184 - AO356_20455 0.17 -2.8 4,567,482 + AO356_20455 0.29 +0.8 4,567,482 + AO356_20455 0.29 -0.2 4,567,483 - AO356_20455 0.29 -1.2
Or see this region's nucleotide sequence