Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20450

Experiment: 4C survival; 192 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20440 and AO356_20445 are separated by 104 nucleotidesAO356_20445 and AO356_20450 are separated by 262 nucleotidesAO356_20450 and AO356_20455 are separated by 63 nucleotides AO356_20440: AO356_20440 - integrase, at 4,564,559 to 4,565,764 _20440 AO356_20445: AO356_20445 - hypothetical protein, at 4,565,869 to 4,566,078 _20445 AO356_20450: AO356_20450 - hypothetical protein, at 4,566,341 to 4,566,679 _20450 AO356_20455: AO356_20455 - toprim domain protein, at 4,566,743 to 4,569,310 _20455 Position (kb) 4566 4567Strain fitness (log2 ratio) -3 -2 -1 0 1at 4565.411 kb on + strand, within AO356_20440at 4565.411 kb on + strand, within AO356_20440at 4565.412 kb on - strand, within AO356_20440at 4565.412 kb on - strand, within AO356_20440at 4565.456 kb on + strand, within AO356_20440at 4565.456 kb on + strand, within AO356_20440at 4565.479 kb on + strand, within AO356_20440at 4565.479 kb on + strand, within AO356_20440at 4565.479 kb on + strand, within AO356_20440at 4565.479 kb on + strand, within AO356_20440at 4565.479 kb on + strand, within AO356_20440at 4565.479 kb on + strand, within AO356_20440at 4565.479 kb on + strand, within AO356_20440at 4565.480 kb on - strand, within AO356_20440at 4565.480 kb on - strand, within AO356_20440at 4565.480 kb on - strand, within AO356_20440at 4565.480 kb on - strand, within AO356_20440at 4565.480 kb on - strand, within AO356_20440at 4565.480 kb on - strand, within AO356_20440at 4565.480 kb on - strand, within AO356_20440at 4565.542 kb on - strand, within AO356_20440at 4565.605 kb on + strand, within AO356_20440at 4565.605 kb on + strand, within AO356_20440at 4565.605 kb on + strand, within AO356_20440at 4565.606 kb on - strand, within AO356_20440at 4565.623 kb on - strand, within AO356_20440at 4565.671 kb on + strandat 4565.671 kb on + strandat 4565.671 kb on + strandat 4565.672 kb on - strandat 4565.672 kb on - strandat 4565.672 kb on - strandat 4565.672 kb on - strandat 4565.674 kb on + strandat 4565.710 kb on + strandat 4565.722 kb on - strandat 4565.722 kb on - strandat 4565.764 kb on + strandat 4565.765 kb on - strandat 4565.783 kb on + strandat 4565.783 kb on + strandat 4565.783 kb on + strandat 4565.783 kb on + strandat 4565.784 kb on - strandat 4565.784 kb on - strandat 4565.784 kb on - strandat 4565.784 kb on - strandat 4565.784 kb on - strandat 4565.784 kb on - strandat 4565.784 kb on - strandat 4565.856 kb on + strandat 4565.856 kb on + strandat 4565.856 kb on + strandat 4565.856 kb on + strandat 4565.856 kb on + strandat 4565.857 kb on - strandat 4565.857 kb on - strandat 4565.979 kb on + strand, within AO356_20445at 4565.979 kb on + strand, within AO356_20445at 4565.979 kb on + strand, within AO356_20445at 4565.990 kb on + strand, within AO356_20445at 4565.990 kb on + strand, within AO356_20445at 4565.991 kb on - strand, within AO356_20445at 4566.066 kb on + strandat 4566.067 kb on - strandat 4566.067 kb on - strandat 4566.106 kb on - strandat 4566.120 kb on + strandat 4566.120 kb on + strandat 4566.121 kb on - strandat 4566.121 kb on - strandat 4566.191 kb on + strandat 4566.192 kb on - strandat 4566.192 kb on - strandat 4566.243 kb on + strandat 4566.244 kb on - strandat 4566.335 kb on + strandat 4566.393 kb on + strand, within AO356_20450at 4566.498 kb on + strand, within AO356_20450at 4566.514 kb on - strand, within AO356_20450at 4566.514 kb on - strand, within AO356_20450at 4566.514 kb on - strand, within AO356_20450at 4566.514 kb on - strand, within AO356_20450at 4566.536 kb on + strand, within AO356_20450at 4566.536 kb on + strand, within AO356_20450at 4566.537 kb on - strand, within AO356_20450at 4566.587 kb on + strand, within AO356_20450at 4566.588 kb on - strand, within AO356_20450at 4566.588 kb on - strand, within AO356_20450at 4566.659 kb on + strandat 4566.659 kb on + strandat 4566.659 kb on + strandat 4566.659 kb on + strandat 4566.660 kb on - strandat 4566.660 kb on - strandat 4566.660 kb on - strandat 4566.660 kb on - strandat 4566.728 kb on + strandat 4566.744 kb on + strandat 4566.744 kb on + strandat 4566.744 kb on + strandat 4566.787 kb on + strandat 4566.831 kb on + strandat 4566.831 kb on + strandat 4566.831 kb on + strandat 4566.831 kb on + strandat 4566.832 kb on - strandat 4566.871 kb on + strandat 4567.114 kb on + strand, within AO356_20455at 4567.115 kb on - strand, within AO356_20455at 4567.184 kb on - strand, within AO356_20455at 4567.482 kb on + strand, within AO356_20455at 4567.482 kb on + strand, within AO356_20455at 4567.483 kb on - strand, within AO356_20455

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 192 hrs
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4,565,411 + AO356_20440 0.71 +1.2
4,565,411 + AO356_20440 0.71 -0.0
4,565,412 - AO356_20440 0.71 -0.4
4,565,412 - AO356_20440 0.71 -1.5
4,565,456 + AO356_20440 0.74 +0.3
4,565,456 + AO356_20440 0.74 -0.0
4,565,479 + AO356_20440 0.76 +0.1
4,565,479 + AO356_20440 0.76 -0.2
4,565,479 + AO356_20440 0.76 +0.3
4,565,479 + AO356_20440 0.76 +0.7
4,565,479 + AO356_20440 0.76 +0.3
4,565,479 + AO356_20440 0.76 +0.2
4,565,479 + AO356_20440 0.76 -0.7
4,565,480 - AO356_20440 0.76 +0.5
4,565,480 - AO356_20440 0.76 +1.1
4,565,480 - AO356_20440 0.76 +1.4
4,565,480 - AO356_20440 0.76 +0.3
4,565,480 - AO356_20440 0.76 -0.2
4,565,480 - AO356_20440 0.76 -0.9
4,565,480 - AO356_20440 0.76 +0.1
4,565,542 - AO356_20440 0.82 +0.3
4,565,605 + AO356_20440 0.87 +0.6
4,565,605 + AO356_20440 0.87 -0.5
4,565,605 + AO356_20440 0.87 -1.3
4,565,606 - AO356_20440 0.87 -0.9
4,565,623 - AO356_20440 0.88 +0.1
4,565,671 + +0.6
4,565,671 + -0.2
4,565,671 + -0.5
4,565,672 - +0.2
4,565,672 - +0.7
4,565,672 - -0.6
4,565,672 - -0.5
4,565,674 + -0.5
4,565,710 + +0.1
4,565,722 - +0.2
4,565,722 - +1.1
4,565,764 + +0.5
4,565,765 - +0.5
4,565,783 + -0.6
4,565,783 + +0.2
4,565,783 + -0.2
4,565,783 + +0.4
4,565,784 - -1.6
4,565,784 - +0.1
4,565,784 - -0.2
4,565,784 - +0.2
4,565,784 - +0.8
4,565,784 - -0.1
4,565,784 - +0.1
4,565,856 + +0.3
4,565,856 + -0.3
4,565,856 + -0.6
4,565,856 + +0.7
4,565,856 + +1.4
4,565,857 - +0.1
4,565,857 - +0.6
4,565,979 + AO356_20445 0.52 +0.2
4,565,979 + AO356_20445 0.52 -0.9
4,565,979 + AO356_20445 0.52 +0.2
4,565,990 + AO356_20445 0.58 +0.1
4,565,990 + AO356_20445 0.58 -1.3
4,565,991 - AO356_20445 0.58 -0.3
4,566,066 + -2.2
4,566,067 - +0.5
4,566,067 - +0.6
4,566,106 - +0.2
4,566,120 + +0.4
4,566,120 + +0.9
4,566,121 - +1.2
4,566,121 - +0.4
4,566,191 + +0.1
4,566,192 - +0.7
4,566,192 - +0.2
4,566,243 + +1.0
4,566,244 - -0.7
4,566,335 + -0.3
4,566,393 + AO356_20450 0.15 +0.8
4,566,498 + AO356_20450 0.46 +1.1
4,566,514 - AO356_20450 0.51 -0.7
4,566,514 - AO356_20450 0.51 -0.3
4,566,514 - AO356_20450 0.51 -0.9
4,566,514 - AO356_20450 0.51 -0.8
4,566,536 + AO356_20450 0.58 -0.2
4,566,536 + AO356_20450 0.58 +1.4
4,566,537 - AO356_20450 0.58 -2.4
4,566,587 + AO356_20450 0.73 +0.5
4,566,588 - AO356_20450 0.73 -0.4
4,566,588 - AO356_20450 0.73 -0.5
4,566,659 + -0.1
4,566,659 + +0.4
4,566,659 + -0.5
4,566,659 + +0.5
4,566,660 - -0.4
4,566,660 - -1.0
4,566,660 - -0.2
4,566,660 - -2.6
4,566,728 + +0.6
4,566,744 + -0.8
4,566,744 + -0.2
4,566,744 + -0.7
4,566,787 + +0.1
4,566,831 + -0.0
4,566,831 + -0.6
4,566,831 + +0.5
4,566,831 + +0.3
4,566,832 - +1.1
4,566,871 + +0.1
4,567,114 + AO356_20455 0.14 +0.1
4,567,115 - AO356_20455 0.14 -1.2
4,567,184 - AO356_20455 0.17 -2.8
4,567,482 + AO356_20455 0.29 +0.8
4,567,482 + AO356_20455 0.29 -0.2
4,567,483 - AO356_20455 0.29 -1.2

Or see this region's nucleotide sequence