Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_20095

Experiment: 4C survival; 192 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_20085 and AO356_20090 overlap by 1 nucleotidesAO356_20090 and AO356_20095 overlap by 4 nucleotidesAO356_20095 and AO356_20100 are separated by 279 nucleotidesAO356_20100 and AO356_20105 overlap by 4 nucleotides AO356_20085: AO356_20085 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 4,494,239 to 4,495,003 _20085 AO356_20090: AO356_20090 - protein tyrosine phosphatase, at 4,495,003 to 4,495,467 _20090 AO356_20095: AO356_20095 - UDP-N-acetylenolpyruvoylglucosamine reductase, at 4,495,464 to 4,496,483 _20095 AO356_20100: AO356_20100 - (2Fe-2S)-binding protein, at 4,496,763 to 4,497,233 _20100 AO356_20105: AO356_20105 - acylaldehyde oxidase, at 4,497,230 to 4,499,545 _20105 Position (kb) 4495 4496 4497Strain fitness (log2 ratio) -2 -1 0 1 2at 4495.032 kb on + strandat 4495.375 kb on + strand, within AO356_20090at 4495.375 kb on + strand, within AO356_20090at 4496.598 kb on - strandat 4496.606 kb on - strandat 4496.627 kb on + strandat 4496.628 kb on - strandat 4496.628 kb on - strandat 4496.662 kb on + strandat 4496.663 kb on - strandat 4496.663 kb on - strandat 4496.663 kb on - strandat 4496.663 kb on - strandat 4496.663 kb on - strandat 4496.745 kb on + strandat 4496.746 kb on - strandat 4496.746 kb on - strandat 4496.746 kb on - strandat 4496.746 kb on - strandat 4496.768 kb on + strandat 4496.846 kb on - strand, within AO356_20100at 4496.846 kb on - strand, within AO356_20100at 4497.057 kb on + strand, within AO356_20100at 4497.057 kb on + strand, within AO356_20100at 4497.171 kb on + strand, within AO356_20100at 4497.171 kb on + strand, within AO356_20100at 4497.171 kb on + strand, within AO356_20100at 4497.171 kb on + strand, within AO356_20100at 4497.171 kb on + strand, within AO356_20100at 4497.172 kb on - strand, within AO356_20100at 4497.172 kb on - strand, within AO356_20100at 4497.172 kb on - strand, within AO356_20100at 4497.413 kb on + strandat 4497.413 kb on + strandat 4497.414 kb on - strandat 4497.414 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 192 hrs
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4,495,032 + -0.2
4,495,375 + AO356_20090 0.80 +0.8
4,495,375 + AO356_20090 0.80 -0.8
4,496,598 - +0.6
4,496,606 - -0.9
4,496,627 + -1.9
4,496,628 - -0.2
4,496,628 - +1.0
4,496,662 + +0.3
4,496,663 - +2.1
4,496,663 - -0.3
4,496,663 - +0.3
4,496,663 - -0.5
4,496,663 - +0.3
4,496,745 + -0.7
4,496,746 - +1.2
4,496,746 - -0.3
4,496,746 - -0.1
4,496,746 - +0.7
4,496,768 + -0.2
4,496,846 - AO356_20100 0.18 -0.9
4,496,846 - AO356_20100 0.18 +0.1
4,497,057 + AO356_20100 0.62 +0.5
4,497,057 + AO356_20100 0.62 +0.4
4,497,171 + AO356_20100 0.87 +0.1
4,497,171 + AO356_20100 0.87 +1.2
4,497,171 + AO356_20100 0.87 -0.1
4,497,171 + AO356_20100 0.87 +0.7
4,497,171 + AO356_20100 0.87 +0.9
4,497,172 - AO356_20100 0.87 -0.7
4,497,172 - AO356_20100 0.87 +0.0
4,497,172 - AO356_20100 0.87 -0.7
4,497,413 + +0.1
4,497,413 + +0.2
4,497,414 - +0.1
4,497,414 - +0.3

Or see this region's nucleotide sequence