Experiment: 4C survival; 192 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_19655 and AO356_19660 are separated by 328 nucleotides AO356_19660 and AO356_19665 overlap by 4 nucleotides AO356_19665 and AO356_19670 are separated by 265 nucleotides
AO356_19655: AO356_19655 - glycine/betaine ABC transporter substrate-binding protein, at 4,406,906 to 4,407,760
_19655
AO356_19660: AO356_19660 - hypothetical protein, at 4,408,089 to 4,408,400
_19660
AO356_19665: AO356_19665 - cation/acetate symporter ActP, at 4,408,397 to 4,410,055
_19665
AO356_19670: AO356_19670 - type II citrate synthase, at 4,410,321 to 4,411,610
_19670
Position (kb)
4408
4409
4410
4411 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4407.564 kb on + strand, within AO356_19655 at 4407.564 kb on + strand, within AO356_19655 at 4407.565 kb on - strand, within AO356_19655 at 4407.758 kb on + strand at 4407.758 kb on + strand at 4407.758 kb on + strand at 4407.758 kb on + strand at 4407.758 kb on + strand at 4407.759 kb on - strand at 4407.759 kb on - strand at 4407.759 kb on - strand at 4407.759 kb on - strand at 4407.759 kb on - strand at 4407.759 kb on - strand at 4407.763 kb on - strand at 4407.763 kb on - strand at 4407.837 kb on + strand at 4407.837 kb on + strand at 4407.883 kb on + strand at 4407.884 kb on - strand at 4407.884 kb on - strand at 4407.884 kb on - strand at 4408.004 kb on + strand at 4408.004 kb on + strand at 4408.004 kb on + strand at 4408.004 kb on + strand at 4408.004 kb on + strand at 4408.004 kb on + strand at 4408.004 kb on + strand at 4408.007 kb on + strand at 4408.007 kb on + strand at 4408.008 kb on - strand at 4408.008 kb on - strand at 4408.008 kb on - strand at 4408.008 kb on - strand at 4408.010 kb on + strand at 4408.010 kb on + strand at 4408.010 kb on + strand at 4408.010 kb on + strand at 4408.011 kb on - strand at 4408.011 kb on - strand at 4408.011 kb on - strand at 4408.011 kb on - strand at 4408.042 kb on + strand at 4408.042 kb on + strand at 4408.043 kb on - strand at 4408.043 kb on - strand at 4408.047 kb on + strand at 4408.047 kb on + strand at 4408.047 kb on + strand at 4408.047 kb on + strand at 4408.048 kb on - strand at 4408.048 kb on - strand at 4408.048 kb on - strand at 4408.048 kb on - strand at 4408.062 kb on + strand at 4408.062 kb on + strand at 4408.063 kb on - strand at 4408.063 kb on - strand at 4408.104 kb on + strand at 4408.104 kb on + strand at 4408.105 kb on - strand at 4408.105 kb on - strand at 4408.105 kb on - strand at 4408.105 kb on - strand at 4408.105 kb on - strand at 4408.280 kb on + strand, within AO356_19660 at 4408.332 kb on + strand, within AO356_19660 at 4408.332 kb on + strand, within AO356_19660 at 4408.332 kb on + strand, within AO356_19660 at 4408.332 kb on + strand, within AO356_19660 at 4408.333 kb on - strand, within AO356_19660 at 4408.333 kb on - strand, within AO356_19660 at 4408.333 kb on - strand, within AO356_19660 at 4408.333 kb on - strand, within AO356_19660 at 4408.333 kb on - strand, within AO356_19660 at 4408.333 kb on - strand, within AO356_19660 at 4408.544 kb on + strand at 4408.544 kb on + strand at 4408.544 kb on + strand at 4408.545 kb on - strand at 4408.545 kb on - strand at 4408.553 kb on + strand at 4408.554 kb on - strand at 4408.589 kb on + strand, within AO356_19665 at 4408.589 kb on + strand, within AO356_19665 at 4408.589 kb on + strand, within AO356_19665 at 4408.589 kb on + strand, within AO356_19665 at 4408.589 kb on + strand, within AO356_19665 at 4408.589 kb on + strand, within AO356_19665 at 4408.590 kb on - strand, within AO356_19665 at 4408.592 kb on + strand, within AO356_19665 at 4408.592 kb on + strand, within AO356_19665 at 4408.592 kb on + strand, within AO356_19665 at 4408.592 kb on + strand, within AO356_19665 at 4408.593 kb on - strand, within AO356_19665 at 4408.593 kb on - strand, within AO356_19665 at 4408.649 kb on + strand, within AO356_19665 at 4408.649 kb on + strand, within AO356_19665 at 4408.649 kb on + strand, within AO356_19665 at 4408.650 kb on - strand, within AO356_19665 at 4408.650 kb on - strand, within AO356_19665 at 4408.650 kb on - strand, within AO356_19665 at 4408.650 kb on - strand, within AO356_19665 at 4408.650 kb on - strand, within AO356_19665 at 4408.704 kb on - strand, within AO356_19665 at 4408.718 kb on + strand, within AO356_19665 at 4408.718 kb on + strand, within AO356_19665 at 4408.718 kb on + strand, within AO356_19665 at 4408.719 kb on - strand, within AO356_19665 at 4408.789 kb on + strand, within AO356_19665 at 4408.790 kb on - strand, within AO356_19665 at 4408.793 kb on + strand, within AO356_19665 at 4408.793 kb on + strand, within AO356_19665 at 4408.793 kb on + strand, within AO356_19665 at 4408.793 kb on + strand, within AO356_19665 at 4408.794 kb on - strand, within AO356_19665 at 4408.794 kb on - strand, within AO356_19665 at 4408.818 kb on - strand, within AO356_19665 at 4408.843 kb on + strand, within AO356_19665 at 4408.843 kb on + strand, within AO356_19665 at 4408.843 kb on + strand, within AO356_19665 at 4408.843 kb on + strand, within AO356_19665 at 4408.843 kb on + strand, within AO356_19665 at 4408.844 kb on - strand, within AO356_19665 at 4408.883 kb on + strand, within AO356_19665 at 4408.883 kb on + strand, within AO356_19665 at 4408.884 kb on - strand, within AO356_19665 at 4408.943 kb on + strand, within AO356_19665 at 4408.944 kb on - strand, within AO356_19665 at 4408.985 kb on + strand, within AO356_19665 at 4408.985 kb on + strand, within AO356_19665 at 4408.985 kb on + strand, within AO356_19665 at 4408.985 kb on + strand, within AO356_19665 at 4408.985 kb on + strand, within AO356_19665 at 4408.985 kb on + strand, within AO356_19665 at 4408.985 kb on + strand, within AO356_19665 at 4408.986 kb on - strand, within AO356_19665 at 4408.986 kb on - strand, within AO356_19665 at 4408.986 kb on - strand, within AO356_19665 at 4408.986 kb on - strand, within AO356_19665 at 4408.986 kb on - strand, within AO356_19665 at 4409.140 kb on + strand, within AO356_19665 at 4409.296 kb on - strand, within AO356_19665 at 4409.300 kb on + strand, within AO356_19665 at 4409.300 kb on + strand, within AO356_19665 at 4409.300 kb on + strand, within AO356_19665 at 4409.300 kb on + strand, within AO356_19665 at 4409.301 kb on - strand, within AO356_19665 at 4409.301 kb on - strand, within AO356_19665 at 4409.301 kb on - strand, within AO356_19665 at 4409.301 kb on - strand, within AO356_19665 at 4409.321 kb on + strand, within AO356_19665 at 4409.321 kb on + strand, within AO356_19665 at 4409.321 kb on + strand, within AO356_19665 at 4409.322 kb on - strand, within AO356_19665 at 4409.322 kb on - strand, within AO356_19665 at 4409.322 kb on - strand, within AO356_19665 at 4409.322 kb on - strand, within AO356_19665 at 4409.327 kb on + strand, within AO356_19665 at 4409.327 kb on + strand, within AO356_19665 at 4409.327 kb on + strand, within AO356_19665 at 4409.327 kb on + strand, within AO356_19665 at 4409.327 kb on + strand, within AO356_19665 at 4409.327 kb on + strand, within AO356_19665 at 4409.327 kb on + strand, within AO356_19665 at 4409.327 kb on + strand, within AO356_19665 at 4409.327 kb on + strand, within AO356_19665 at 4409.327 kb on + strand, within AO356_19665 at 4409.327 kb on + strand, within AO356_19665 at 4409.327 kb on + strand, within AO356_19665 at 4409.328 kb on - strand, within AO356_19665 at 4409.328 kb on - strand, within AO356_19665 at 4409.328 kb on - strand, within AO356_19665 at 4409.328 kb on - strand, within AO356_19665 at 4409.328 kb on - strand, within AO356_19665 at 4409.328 kb on - strand, within AO356_19665 at 4409.328 kb on - strand, within AO356_19665 at 4409.328 kb on - strand, within AO356_19665 at 4409.328 kb on - strand, within AO356_19665 at 4409.328 kb on - strand, within AO356_19665 at 4409.328 kb on - strand, within AO356_19665 at 4409.328 kb on - strand, within AO356_19665 at 4409.330 kb on - strand, within AO356_19665 at 4409.330 kb on - strand, within AO356_19665 at 4409.420 kb on - strand, within AO356_19665 at 4409.422 kb on + strand, within AO356_19665 at 4409.422 kb on + strand, within AO356_19665 at 4409.422 kb on + strand, within AO356_19665 at 4409.422 kb on + strand, within AO356_19665 at 4409.422 kb on + strand, within AO356_19665 at 4409.422 kb on + strand, within AO356_19665 at 4409.423 kb on - strand, within AO356_19665 at 4409.423 kb on - strand, within AO356_19665 at 4409.564 kb on + strand, within AO356_19665 at 4409.564 kb on + strand, within AO356_19665 at 4409.564 kb on + strand, within AO356_19665 at 4409.565 kb on - strand, within AO356_19665 at 4409.759 kb on + strand, within AO356_19665 at 4409.891 kb on + strand at 4409.892 kb on - strand at 4409.897 kb on + strand at 4410.058 kb on + strand at 4410.059 kb on - strand at 4410.059 kb on - strand at 4410.059 kb on - strand at 4410.064 kb on + strand at 4410.231 kb on + strand at 4410.231 kb on + strand at 4410.231 kb on + strand at 4410.232 kb on - strand at 4410.232 kb on - strand at 4410.232 kb on - strand at 4410.265 kb on + strand at 4410.265 kb on + strand at 4410.265 kb on + strand at 4410.266 kb on - strand at 4410.266 kb on - strand at 4410.266 kb on - strand at 4410.267 kb on + strand at 4410.267 kb on + strand at 4410.267 kb on + strand at 4410.267 kb on + strand at 4410.267 kb on + strand at 4410.268 kb on - strand at 4410.268 kb on - strand at 4410.268 kb on - strand at 4410.268 kb on - strand at 4410.268 kb on - strand at 4410.268 kb on - strand at 4410.268 kb on - strand at 4410.269 kb on + strand at 4410.269 kb on + strand at 4410.269 kb on + strand at 4410.269 kb on + strand at 4410.270 kb on - strand at 4410.270 kb on - strand at 4410.270 kb on - strand at 4410.270 kb on - strand at 4410.270 kb on - strand at 4410.270 kb on - strand at 4410.305 kb on + strand at 4410.322 kb on + strand at 4410.322 kb on + strand at 4410.322 kb on + strand at 4410.323 kb on - strand at 4410.323 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 192 hrs remove 4,407,564 + AO356_19655 0.77 -0.7 4,407,564 + AO356_19655 0.77 -0.5 4,407,565 - AO356_19655 0.77 -0.6 4,407,758 + -0.1 4,407,758 + +0.5 4,407,758 + +1.3 4,407,758 + -1.4 4,407,758 + +0.5 4,407,759 - -1.3 4,407,759 - +0.2 4,407,759 - +1.6 4,407,759 - +1.1 4,407,759 - +0.4 4,407,759 - +0.9 4,407,763 - +0.3 4,407,763 - +0.4 4,407,837 + +0.3 4,407,837 + -0.7 4,407,883 + -0.2 4,407,884 - -0.1 4,407,884 - +0.8 4,407,884 - +0.9 4,408,004 + +0.3 4,408,004 + +0.5 4,408,004 + -0.3 4,408,004 + +1.1 4,408,004 + +0.3 4,408,004 + -0.4 4,408,004 + +0.2 4,408,007 + +1.0 4,408,007 + -0.8 4,408,008 - +0.8 4,408,008 - +0.7 4,408,008 - +0.8 4,408,008 - +0.7 4,408,010 + -0.0 4,408,010 + -0.4 4,408,010 + -0.6 4,408,010 + -1.3 4,408,011 - -0.1 4,408,011 - -0.1 4,408,011 - +1.8 4,408,011 - +0.0 4,408,042 + +0.3 4,408,042 + -0.3 4,408,043 - +0.5 4,408,043 - +0.1 4,408,047 + -0.2 4,408,047 + -0.6 4,408,047 + +0.6 4,408,047 + -0.2 4,408,048 - -0.1 4,408,048 - -0.4 4,408,048 - +0.7 4,408,048 - +0.7 4,408,062 + +0.4 4,408,062 + +0.1 4,408,063 - +1.8 4,408,063 - +0.8 4,408,104 + -0.1 4,408,104 + -0.4 4,408,105 - +0.3 4,408,105 - +0.3 4,408,105 - +0.8 4,408,105 - -0.1 4,408,105 - +0.1 4,408,280 + AO356_19660 0.61 +2.2 4,408,332 + AO356_19660 0.78 +0.5 4,408,332 + AO356_19660 0.78 +0.8 4,408,332 + AO356_19660 0.78 -0.0 4,408,332 + AO356_19660 0.78 +0.5 4,408,333 - AO356_19660 0.78 +0.6 4,408,333 - AO356_19660 0.78 -1.2 4,408,333 - AO356_19660 0.78 +0.0 4,408,333 - AO356_19660 0.78 -1.4 4,408,333 - AO356_19660 0.78 -0.2 4,408,333 - AO356_19660 0.78 +0.2 4,408,544 + +0.3 4,408,544 + -0.5 4,408,544 + +0.2 4,408,545 - -0.2 4,408,545 - +0.2 4,408,553 + +1.0 4,408,554 - -1.1 4,408,589 + AO356_19665 0.12 +0.1 4,408,589 + AO356_19665 0.12 -1.2 4,408,589 + AO356_19665 0.12 +0.9 4,408,589 + AO356_19665 0.12 +0.1 4,408,589 + AO356_19665 0.12 +0.5 4,408,589 + AO356_19665 0.12 -0.3 4,408,590 - AO356_19665 0.12 -0.8 4,408,592 + AO356_19665 0.12 -0.5 4,408,592 + AO356_19665 0.12 -0.8 4,408,592 + AO356_19665 0.12 +1.0 4,408,592 + AO356_19665 0.12 -0.9 4,408,593 - AO356_19665 0.12 +0.7 4,408,593 - AO356_19665 0.12 -0.8 4,408,649 + AO356_19665 0.15 +0.2 4,408,649 + AO356_19665 0.15 -0.0 4,408,649 + AO356_19665 0.15 -0.4 4,408,650 - AO356_19665 0.15 +0.4 4,408,650 - AO356_19665 0.15 +1.8 4,408,650 - AO356_19665 0.15 -0.6 4,408,650 - AO356_19665 0.15 +1.0 4,408,650 - AO356_19665 0.15 +0.8 4,408,704 - AO356_19665 0.19 +0.2 4,408,718 + AO356_19665 0.19 +0.0 4,408,718 + AO356_19665 0.19 -0.7 4,408,718 + AO356_19665 0.19 -1.6 4,408,719 - AO356_19665 0.19 +0.3 4,408,789 + AO356_19665 0.24 +1.2 4,408,790 - AO356_19665 0.24 +1.1 4,408,793 + AO356_19665 0.24 -0.0 4,408,793 + AO356_19665 0.24 +0.1 4,408,793 + AO356_19665 0.24 -0.1 4,408,793 + AO356_19665 0.24 +0.1 4,408,794 - AO356_19665 0.24 -0.5 4,408,794 - AO356_19665 0.24 -0.2 4,408,818 - AO356_19665 0.25 -0.1 4,408,843 + AO356_19665 0.27 +0.1 4,408,843 + AO356_19665 0.27 -0.0 4,408,843 + AO356_19665 0.27 -0.2 4,408,843 + AO356_19665 0.27 +1.9 4,408,843 + AO356_19665 0.27 -0.5 4,408,844 - AO356_19665 0.27 +0.1 4,408,883 + AO356_19665 0.29 +1.9 4,408,883 + AO356_19665 0.29 -0.7 4,408,884 - AO356_19665 0.29 -0.5 4,408,943 + AO356_19665 0.33 -1.0 4,408,944 - AO356_19665 0.33 +0.2 4,408,985 + AO356_19665 0.35 -0.4 4,408,985 + AO356_19665 0.35 +0.5 4,408,985 + AO356_19665 0.35 +0.3 4,408,985 + AO356_19665 0.35 -0.3 4,408,985 + AO356_19665 0.35 +0.0 4,408,985 + AO356_19665 0.35 +0.5 4,408,985 + AO356_19665 0.35 +0.8 4,408,986 - AO356_19665 0.36 -0.3 4,408,986 - AO356_19665 0.36 -1.0 4,408,986 - AO356_19665 0.36 -0.2 4,408,986 - AO356_19665 0.36 -0.3 4,408,986 - AO356_19665 0.36 +0.7 4,409,140 + AO356_19665 0.45 -0.4 4,409,296 - AO356_19665 0.54 -0.0 4,409,300 + AO356_19665 0.54 -1.4 4,409,300 + AO356_19665 0.54 +0.3 4,409,300 + AO356_19665 0.54 -0.3 4,409,300 + AO356_19665 0.54 +1.4 4,409,301 - AO356_19665 0.54 +0.4 4,409,301 - AO356_19665 0.54 +0.5 4,409,301 - AO356_19665 0.54 -0.4 4,409,301 - AO356_19665 0.54 -0.6 4,409,321 + AO356_19665 0.56 +0.1 4,409,321 + AO356_19665 0.56 +1.2 4,409,321 + AO356_19665 0.56 -0.4 4,409,322 - AO356_19665 0.56 +1.0 4,409,322 - AO356_19665 0.56 -1.3 4,409,322 - AO356_19665 0.56 -0.4 4,409,322 - AO356_19665 0.56 +0.1 4,409,327 + AO356_19665 0.56 +0.7 4,409,327 + AO356_19665 0.56 -0.1 4,409,327 + AO356_19665 0.56 -0.6 4,409,327 + AO356_19665 0.56 +1.5 4,409,327 + AO356_19665 0.56 +0.3 4,409,327 + AO356_19665 0.56 +1.2 4,409,327 + AO356_19665 0.56 +0.3 4,409,327 + AO356_19665 0.56 -0.3 4,409,327 + AO356_19665 0.56 +0.4 4,409,327 + AO356_19665 0.56 +0.4 4,409,327 + AO356_19665 0.56 -0.7 4,409,327 + AO356_19665 0.56 +0.0 4,409,328 - AO356_19665 0.56 +0.6 4,409,328 - AO356_19665 0.56 +0.3 4,409,328 - AO356_19665 0.56 -0.4 4,409,328 - AO356_19665 0.56 -0.4 4,409,328 - AO356_19665 0.56 +1.1 4,409,328 - AO356_19665 0.56 +0.1 4,409,328 - AO356_19665 0.56 -0.1 4,409,328 - AO356_19665 0.56 +0.2 4,409,328 - AO356_19665 0.56 +1.4 4,409,328 - AO356_19665 0.56 -0.3 4,409,328 - AO356_19665 0.56 +0.2 4,409,328 - AO356_19665 0.56 +1.4 4,409,330 - AO356_19665 0.56 +0.4 4,409,330 - AO356_19665 0.56 +0.5 4,409,420 - AO356_19665 0.62 -0.3 4,409,422 + AO356_19665 0.62 +0.1 4,409,422 + AO356_19665 0.62 -0.2 4,409,422 + AO356_19665 0.62 +0.1 4,409,422 + AO356_19665 0.62 -0.2 4,409,422 + AO356_19665 0.62 +0.1 4,409,422 + AO356_19665 0.62 -0.0 4,409,423 - AO356_19665 0.62 -0.3 4,409,423 - AO356_19665 0.62 +0.3 4,409,564 + AO356_19665 0.70 +0.4 4,409,564 + AO356_19665 0.70 +1.3 4,409,564 + AO356_19665 0.70 +0.3 4,409,565 - AO356_19665 0.70 -0.5 4,409,759 + AO356_19665 0.82 -0.2 4,409,891 + +0.2 4,409,892 - +0.3 4,409,897 + -0.4 4,410,058 + +1.6 4,410,059 - +0.6 4,410,059 - +2.8 4,410,059 - +0.6 4,410,064 + +0.5 4,410,231 + +0.8 4,410,231 + +0.3 4,410,231 + +0.2 4,410,232 - +0.8 4,410,232 - -0.2 4,410,232 - +0.1 4,410,265 + -0.0 4,410,265 + -0.0 4,410,265 + +0.8 4,410,266 - -1.5 4,410,266 - -0.2 4,410,266 - +0.8 4,410,267 + -0.9 4,410,267 + -0.6 4,410,267 + +0.6 4,410,267 + -0.5 4,410,267 + -1.1 4,410,268 - -0.0 4,410,268 - +0.0 4,410,268 - -0.1 4,410,268 - +0.8 4,410,268 - -1.3 4,410,268 - -0.1 4,410,268 - -1.1 4,410,269 + -1.2 4,410,269 + -0.6 4,410,269 + +0.7 4,410,269 + -0.5 4,410,270 - -0.7 4,410,270 - +0.1 4,410,270 - +1.4 4,410,270 - -0.5 4,410,270 - -0.4 4,410,270 - +0.5 4,410,305 + -0.7 4,410,322 + -0.2 4,410,322 + -2.1 4,410,322 + -0.9 4,410,323 - +1.3 4,410,323 - +0.8
Or see this region's nucleotide sequence