Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_17280

Experiment: 4C survival; 192 hrs

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_17275 and AO356_17280 are separated by 220 nucleotidesAO356_17280 and AO356_17285 are separated by 11 nucleotides AO356_17275: AO356_17275 - poly(beta-D-mannuronate) O-acetylase, at 3,890,539 to 3,892,104 _17275 AO356_17280: AO356_17280 - poly(beta-D-mannuronate) lyase, at 3,892,325 to 3,893,461 _17280 AO356_17285: AO356_17285 - alginate O-acetyltransferase, at 3,893,473 to 3,894,924 _17285 Position (kb) 3892 3893 3894Strain fitness (log2 ratio) -2 -1 0 1at 3891.386 kb on + strand, within AO356_17275at 3891.387 kb on - strand, within AO356_17275at 3891.401 kb on + strand, within AO356_17275at 3891.401 kb on + strand, within AO356_17275at 3891.402 kb on - strand, within AO356_17275at 3891.402 kb on - strand, within AO356_17275at 3891.698 kb on + strand, within AO356_17275at 3891.698 kb on + strand, within AO356_17275at 3891.699 kb on - strand, within AO356_17275at 3891.699 kb on - strand, within AO356_17275at 3891.719 kb on + strand, within AO356_17275at 3891.719 kb on + strand, within AO356_17275at 3891.719 kb on + strand, within AO356_17275at 3891.720 kb on - strand, within AO356_17275at 3891.720 kb on - strand, within AO356_17275at 3891.821 kb on + strand, within AO356_17275at 3891.821 kb on + strand, within AO356_17275at 3891.821 kb on + strand, within AO356_17275at 3891.821 kb on + strand, within AO356_17275at 3891.930 kb on - strand, within AO356_17275at 3891.930 kb on - strand, within AO356_17275at 3891.986 kb on + strandat 3891.986 kb on + strandat 3891.986 kb on + strandat 3891.986 kb on + strandat 3891.986 kb on + strandat 3891.986 kb on + strandat 3891.986 kb on + strandat 3891.986 kb on + strandat 3891.986 kb on + strandat 3891.986 kb on + strandat 3891.987 kb on - strandat 3891.987 kb on - strandat 3891.987 kb on - strandat 3891.995 kb on + strandat 3891.995 kb on + strandat 3891.995 kb on + strandat 3891.996 kb on - strandat 3892.043 kb on + strandat 3892.046 kb on + strandat 3892.047 kb on - strandat 3892.099 kb on + strandat 3892.183 kb on - strandat 3892.183 kb on - strandat 3892.183 kb on - strandat 3892.183 kb on - strandat 3892.265 kb on + strandat 3892.265 kb on + strandat 3892.265 kb on + strandat 3892.265 kb on + strandat 3892.265 kb on + strandat 3892.265 kb on + strandat 3892.265 kb on + strandat 3892.266 kb on - strandat 3892.362 kb on + strandat 3892.362 kb on + strandat 3892.362 kb on + strandat 3892.362 kb on + strandat 3892.449 kb on + strand, within AO356_17280at 3892.449 kb on + strand, within AO356_17280at 3892.450 kb on - strand, within AO356_17280at 3892.668 kb on + strand, within AO356_17280at 3892.668 kb on + strand, within AO356_17280at 3892.668 kb on + strand, within AO356_17280at 3892.668 kb on + strand, within AO356_17280at 3892.668 kb on + strand, within AO356_17280at 3892.668 kb on + strand, within AO356_17280at 3892.669 kb on - strand, within AO356_17280at 3892.669 kb on - strand, within AO356_17280at 3892.669 kb on - strand, within AO356_17280at 3892.755 kb on + strand, within AO356_17280at 3892.755 kb on + strand, within AO356_17280at 3892.755 kb on + strand, within AO356_17280at 3892.755 kb on + strand, within AO356_17280at 3892.755 kb on + strand, within AO356_17280at 3892.756 kb on - strand, within AO356_17280at 3892.756 kb on - strand, within AO356_17280at 3892.833 kb on + strand, within AO356_17280at 3892.833 kb on + strand, within AO356_17280at 3892.980 kb on + strand, within AO356_17280at 3892.981 kb on - strand, within AO356_17280at 3893.245 kb on - strand, within AO356_17280at 3893.274 kb on + strand, within AO356_17280at 3893.274 kb on + strand, within AO356_17280at 3893.274 kb on + strand, within AO356_17280at 3893.274 kb on + strand, within AO356_17280at 3893.275 kb on - strand, within AO356_17280at 3893.275 kb on - strand, within AO356_17280at 3893.343 kb on + strand, within AO356_17280at 3893.344 kb on - strand, within AO356_17280at 3893.344 kb on - strand, within AO356_17280at 3893.453 kb on - strandat 3893.591 kb on - strandat 3893.705 kb on + strand, within AO356_17285at 3893.705 kb on + strand, within AO356_17285at 3893.705 kb on + strand, within AO356_17285at 3893.706 kb on - strand, within AO356_17285at 3893.706 kb on - strand, within AO356_17285at 3893.796 kb on + strand, within AO356_17285at 3893.797 kb on - strand, within AO356_17285at 3893.903 kb on + strand, within AO356_17285at 3893.904 kb on - strand, within AO356_17285at 3893.928 kb on - strand, within AO356_17285at 3894.086 kb on + strand, within AO356_17285at 3894.086 kb on + strand, within AO356_17285at 3894.086 kb on + strand, within AO356_17285at 3894.087 kb on - strand, within AO356_17285at 3894.087 kb on - strand, within AO356_17285at 3894.200 kb on + strand, within AO356_17285at 3894.200 kb on + strand, within AO356_17285at 3894.200 kb on + strand, within AO356_17285at 3894.200 kb on + strand, within AO356_17285at 3894.200 kb on + strand, within AO356_17285at 3894.201 kb on - strand, within AO356_17285at 3894.212 kb on + strand, within AO356_17285at 3894.212 kb on + strand, within AO356_17285at 3894.213 kb on - strand, within AO356_17285at 3894.213 kb on - strand, within AO356_17285at 3894.213 kb on - strand, within AO356_17285at 3894.402 kb on - strand, within AO356_17285

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 192 hrs
remove
3,891,386 + AO356_17275 0.54 -0.1
3,891,387 - AO356_17275 0.54 -0.2
3,891,401 + AO356_17275 0.55 +0.6
3,891,401 + AO356_17275 0.55 +0.2
3,891,402 - AO356_17275 0.55 -0.7
3,891,402 - AO356_17275 0.55 +0.3
3,891,698 + AO356_17275 0.74 +1.6
3,891,698 + AO356_17275 0.74 +0.5
3,891,699 - AO356_17275 0.74 +0.7
3,891,699 - AO356_17275 0.74 -0.6
3,891,719 + AO356_17275 0.75 +0.0
3,891,719 + AO356_17275 0.75 +0.2
3,891,719 + AO356_17275 0.75 -1.3
3,891,720 - AO356_17275 0.75 -2.3
3,891,720 - AO356_17275 0.75 -0.5
3,891,821 + AO356_17275 0.82 +0.6
3,891,821 + AO356_17275 0.82 +0.4
3,891,821 + AO356_17275 0.82 +1.5
3,891,821 + AO356_17275 0.82 -0.0
3,891,930 - AO356_17275 0.89 +0.5
3,891,930 - AO356_17275 0.89 +0.3
3,891,986 + -0.1
3,891,986 + +1.2
3,891,986 + +0.2
3,891,986 + -0.5
3,891,986 + +0.4
3,891,986 + -0.4
3,891,986 + -0.1
3,891,986 + +0.3
3,891,986 + +0.1
3,891,986 + +0.6
3,891,987 - -0.8
3,891,987 - -1.1
3,891,987 - +0.5
3,891,995 + -0.5
3,891,995 + -0.1
3,891,995 + -0.3
3,891,996 - +0.1
3,892,043 + +0.6
3,892,046 + +0.0
3,892,047 - -1.4
3,892,099 + +0.8
3,892,183 - -0.5
3,892,183 - -0.5
3,892,183 - -1.4
3,892,183 - -0.3
3,892,265 + +0.8
3,892,265 + +0.8
3,892,265 + -1.9
3,892,265 + +0.2
3,892,265 + -0.7
3,892,265 + -0.2
3,892,265 + +0.4
3,892,266 - -0.6
3,892,362 + -0.2
3,892,362 + +0.2
3,892,362 + -0.6
3,892,362 + +0.7
3,892,449 + AO356_17280 0.11 -0.7
3,892,449 + AO356_17280 0.11 -1.0
3,892,450 - AO356_17280 0.11 -0.7
3,892,668 + AO356_17280 0.30 +0.2
3,892,668 + AO356_17280 0.30 +0.6
3,892,668 + AO356_17280 0.30 -0.5
3,892,668 + AO356_17280 0.30 -0.7
3,892,668 + AO356_17280 0.30 +0.8
3,892,668 + AO356_17280 0.30 -0.2
3,892,669 - AO356_17280 0.30 -2.0
3,892,669 - AO356_17280 0.30 -0.5
3,892,669 - AO356_17280 0.30 -0.8
3,892,755 + AO356_17280 0.38 +0.6
3,892,755 + AO356_17280 0.38 +0.0
3,892,755 + AO356_17280 0.38 +0.4
3,892,755 + AO356_17280 0.38 +0.7
3,892,755 + AO356_17280 0.38 -0.0
3,892,756 - AO356_17280 0.38 -0.4
3,892,756 - AO356_17280 0.38 -1.1
3,892,833 + AO356_17280 0.45 -0.2
3,892,833 + AO356_17280 0.45 -0.1
3,892,980 + AO356_17280 0.58 -1.3
3,892,981 - AO356_17280 0.58 -1.1
3,893,245 - AO356_17280 0.81 -2.0
3,893,274 + AO356_17280 0.83 -0.0
3,893,274 + AO356_17280 0.83 +0.1
3,893,274 + AO356_17280 0.83 -0.1
3,893,274 + AO356_17280 0.83 +0.7
3,893,275 - AO356_17280 0.84 -0.3
3,893,275 - AO356_17280 0.84 -1.9
3,893,343 + AO356_17280 0.90 +0.4
3,893,344 - AO356_17280 0.90 -2.1
3,893,344 - AO356_17280 0.90 -1.8
3,893,453 - -0.8
3,893,591 - -0.8
3,893,705 + AO356_17285 0.16 +1.3
3,893,705 + AO356_17285 0.16 -0.8
3,893,705 + AO356_17285 0.16 -0.5
3,893,706 - AO356_17285 0.16 -2.0
3,893,706 - AO356_17285 0.16 -0.9
3,893,796 + AO356_17285 0.22 +0.9
3,893,797 - AO356_17285 0.22 -0.8
3,893,903 + AO356_17285 0.30 -0.4
3,893,904 - AO356_17285 0.30 +0.1
3,893,928 - AO356_17285 0.31 -1.8
3,894,086 + AO356_17285 0.42 -0.0
3,894,086 + AO356_17285 0.42 +0.8
3,894,086 + AO356_17285 0.42 +0.7
3,894,087 - AO356_17285 0.42 +0.1
3,894,087 - AO356_17285 0.42 -1.6
3,894,200 + AO356_17285 0.50 -0.0
3,894,200 + AO356_17285 0.50 +0.1
3,894,200 + AO356_17285 0.50 -0.2
3,894,200 + AO356_17285 0.50 +0.2
3,894,200 + AO356_17285 0.50 +1.4
3,894,201 - AO356_17285 0.50 +0.6
3,894,212 + AO356_17285 0.51 -0.6
3,894,212 + AO356_17285 0.51 +1.1
3,894,213 - AO356_17285 0.51 -0.6
3,894,213 - AO356_17285 0.51 -2.1
3,894,213 - AO356_17285 0.51 -0.0
3,894,402 - AO356_17285 0.64 -0.0

Or see this region's nucleotide sequence