Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13350

Experiment: 4C survival; 192 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_13340 and AO356_13345 overlap by 4 nucleotidesAO356_13345 and AO356_13350 overlap by 4 nucleotidesAO356_13350 and AO356_13355 are separated by 113 nucleotides AO356_13340: AO356_13340 - signal recognition particle-docking protein FtsY, at 3,031,482 to 3,032,915 _13340 AO356_13345: AO356_13345 - cell division ATP-binding protein FtsE, at 3,032,912 to 3,033,583 _13345 AO356_13350: AO356_13350 - cell division protein FtsX, at 3,033,580 to 3,034,602 _13350 AO356_13355: AO356_13355 - RNA polymerase subunit sigma-70, at 3,034,716 to 3,035,570 _13355 Position (kb) 3033 3034 3035Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3032.936 kb on - strandat 3033.137 kb on + strand, within AO356_13345at 3033.138 kb on - strand, within AO356_13345at 3033.311 kb on + strand, within AO356_13345at 3033.777 kb on + strand, within AO356_13350at 3033.778 kb on - strand, within AO356_13350at 3033.778 kb on - strand, within AO356_13350at 3033.778 kb on - strand, within AO356_13350at 3033.827 kb on + strand, within AO356_13350at 3033.827 kb on + strand, within AO356_13350at 3033.837 kb on + strand, within AO356_13350at 3033.837 kb on + strand, within AO356_13350at 3033.837 kb on + strand, within AO356_13350at 3033.838 kb on - strand, within AO356_13350at 3033.838 kb on - strand, within AO356_13350at 3033.838 kb on - strand, within AO356_13350at 3033.889 kb on + strand, within AO356_13350at 3033.889 kb on + strand, within AO356_13350at 3033.889 kb on + strand, within AO356_13350at 3033.890 kb on - strand, within AO356_13350at 3033.973 kb on + strand, within AO356_13350at 3033.973 kb on + strand, within AO356_13350at 3033.974 kb on - strand, within AO356_13350at 3033.974 kb on - strand, within AO356_13350at 3033.974 kb on - strand, within AO356_13350at 3034.115 kb on + strand, within AO356_13350at 3034.115 kb on + strand, within AO356_13350at 3034.115 kb on + strand, within AO356_13350at 3034.116 kb on - strand, within AO356_13350at 3034.116 kb on - strand, within AO356_13350at 3034.116 kb on - strand, within AO356_13350at 3034.116 kb on - strand, within AO356_13350at 3034.116 kb on - strand, within AO356_13350at 3034.116 kb on - strand, within AO356_13350at 3034.116 kb on - strand, within AO356_13350at 3034.116 kb on - strand, within AO356_13350at 3034.145 kb on + strand, within AO356_13350at 3034.146 kb on - strand, within AO356_13350at 3034.146 kb on - strand, within AO356_13350at 3034.146 kb on - strand, within AO356_13350at 3034.146 kb on - strand, within AO356_13350at 3034.166 kb on + strand, within AO356_13350at 3034.166 kb on + strand, within AO356_13350at 3034.167 kb on - strand, within AO356_13350at 3034.167 kb on - strand, within AO356_13350at 3034.251 kb on - strand, within AO356_13350at 3034.263 kb on - strand, within AO356_13350at 3034.263 kb on - strand, within AO356_13350at 3034.263 kb on - strand, within AO356_13350at 3034.269 kb on + strand, within AO356_13350at 3034.269 kb on + strand, within AO356_13350at 3034.269 kb on + strand, within AO356_13350at 3034.270 kb on - strand, within AO356_13350at 3034.270 kb on - strand, within AO356_13350at 3034.284 kb on + strand, within AO356_13350at 3034.307 kb on + strand, within AO356_13350at 3034.307 kb on + strand, within AO356_13350at 3034.307 kb on + strand, within AO356_13350at 3034.307 kb on + strand, within AO356_13350at 3034.307 kb on + strand, within AO356_13350at 3034.307 kb on + strand, within AO356_13350at 3034.307 kb on + strand, within AO356_13350at 3034.307 kb on + strand, within AO356_13350at 3034.317 kb on + strand, within AO356_13350at 3034.318 kb on - strand, within AO356_13350at 3034.318 kb on - strand, within AO356_13350at 3034.318 kb on - strand, within AO356_13350at 3034.342 kb on + strand, within AO356_13350at 3034.342 kb on + strand, within AO356_13350at 3034.342 kb on + strand, within AO356_13350at 3034.342 kb on + strand, within AO356_13350at 3034.342 kb on + strand, within AO356_13350at 3034.342 kb on + strand, within AO356_13350at 3034.342 kb on + strand, within AO356_13350at 3034.342 kb on + strand, within AO356_13350at 3034.342 kb on + strand, within AO356_13350at 3034.342 kb on + strand, within AO356_13350at 3034.342 kb on + strand, within AO356_13350at 3034.343 kb on - strand, within AO356_13350at 3034.343 kb on - strand, within AO356_13350at 3034.343 kb on - strand, within AO356_13350at 3034.343 kb on - strand, within AO356_13350at 3034.343 kb on - strand, within AO356_13350at 3034.343 kb on - strand, within AO356_13350at 3034.343 kb on - strand, within AO356_13350at 3034.343 kb on - strand, within AO356_13350at 3034.343 kb on - strand, within AO356_13350at 3034.343 kb on - strand, within AO356_13350at 3034.343 kb on - strand, within AO356_13350at 3034.343 kb on - strand, within AO356_13350at 3034.343 kb on - strand, within AO356_13350at 3034.343 kb on - strand, within AO356_13350at 3034.343 kb on - strand, within AO356_13350at 3034.346 kb on + strand, within AO356_13350at 3034.346 kb on + strand, within AO356_13350at 3034.346 kb on + strand, within AO356_13350at 3034.346 kb on + strand, within AO356_13350at 3034.346 kb on + strand, within AO356_13350at 3034.346 kb on + strand, within AO356_13350at 3034.346 kb on + strand, within AO356_13350at 3034.346 kb on + strand, within AO356_13350at 3034.346 kb on + strand, within AO356_13350at 3034.346 kb on + strand, within AO356_13350at 3034.347 kb on - strand, within AO356_13350at 3034.347 kb on - strand, within AO356_13350at 3034.347 kb on - strand, within AO356_13350at 3034.347 kb on - strand, within AO356_13350at 3034.347 kb on - strand, within AO356_13350at 3034.363 kb on + strand, within AO356_13350at 3034.363 kb on + strand, within AO356_13350at 3034.363 kb on + strand, within AO356_13350at 3034.363 kb on + strand, within AO356_13350at 3034.363 kb on + strand, within AO356_13350at 3034.363 kb on + strand, within AO356_13350at 3034.363 kb on + strand, within AO356_13350at 3034.363 kb on + strand, within AO356_13350at 3034.363 kb on + strand, within AO356_13350at 3034.364 kb on - strand, within AO356_13350at 3034.364 kb on - strand, within AO356_13350at 3034.364 kb on - strand, within AO356_13350at 3034.364 kb on - strand, within AO356_13350at 3034.364 kb on - strand, within AO356_13350at 3034.364 kb on - strand, within AO356_13350at 3034.364 kb on - strand, within AO356_13350at 3034.364 kb on - strand, within AO356_13350at 3034.364 kb on - strand, within AO356_13350at 3034.364 kb on - strand, within AO356_13350at 3034.364 kb on - strand, within AO356_13350at 3034.364 kb on - strand, within AO356_13350at 3034.364 kb on - strand, within AO356_13350at 3034.364 kb on - strand, within AO356_13350at 3034.364 kb on - strand, within AO356_13350at 3034.365 kb on + strand, within AO356_13350at 3034.365 kb on + strand, within AO356_13350at 3034.365 kb on + strand, within AO356_13350at 3034.365 kb on + strand, within AO356_13350at 3034.366 kb on - strand, within AO356_13350at 3034.378 kb on + strand, within AO356_13350at 3034.378 kb on + strand, within AO356_13350at 3034.378 kb on + strand, within AO356_13350at 3034.378 kb on + strand, within AO356_13350at 3034.378 kb on + strand, within AO356_13350at 3034.379 kb on - strand, within AO356_13350at 3034.379 kb on - strand, within AO356_13350at 3034.379 kb on - strand, within AO356_13350at 3034.468 kb on + strand, within AO356_13350at 3034.469 kb on - strand, within AO356_13350at 3034.546 kb on + strandat 3034.546 kb on + strandat 3034.546 kb on + strandat 3034.600 kb on + strandat 3034.600 kb on + strandat 3034.600 kb on + strandat 3034.600 kb on + strandat 3034.600 kb on + strandat 3034.617 kb on + strandat 3034.692 kb on + strandat 3034.692 kb on + strandat 3034.692 kb on + strandat 3034.715 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 192 hrs
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3,032,936 - -0.3
3,033,137 + AO356_13345 0.33 -1.7
3,033,138 - AO356_13345 0.34 -1.7
3,033,311 + AO356_13345 0.59 -0.7
3,033,777 + AO356_13350 0.19 -0.3
3,033,778 - AO356_13350 0.19 -1.7
3,033,778 - AO356_13350 0.19 -1.7
3,033,778 - AO356_13350 0.19 -0.0
3,033,827 + AO356_13350 0.24 -1.5
3,033,827 + AO356_13350 0.24 -1.1
3,033,837 + AO356_13350 0.25 +0.1
3,033,837 + AO356_13350 0.25 -0.1
3,033,837 + AO356_13350 0.25 -0.7
3,033,838 - AO356_13350 0.25 -1.0
3,033,838 - AO356_13350 0.25 -0.2
3,033,838 - AO356_13350 0.25 -0.4
3,033,889 + AO356_13350 0.30 -1.1
3,033,889 + AO356_13350 0.30 -0.5
3,033,889 + AO356_13350 0.30 -0.0
3,033,890 - AO356_13350 0.30 -0.5
3,033,973 + AO356_13350 0.38 -1.9
3,033,973 + AO356_13350 0.38 -1.5
3,033,974 - AO356_13350 0.39 -1.1
3,033,974 - AO356_13350 0.39 -0.4
3,033,974 - AO356_13350 0.39 -1.5
3,034,115 + AO356_13350 0.52 -0.8
3,034,115 + AO356_13350 0.52 -0.5
3,034,115 + AO356_13350 0.52 -2.0
3,034,116 - AO356_13350 0.52 -1.2
3,034,116 - AO356_13350 0.52 +0.3
3,034,116 - AO356_13350 0.52 -0.3
3,034,116 - AO356_13350 0.52 -0.5
3,034,116 - AO356_13350 0.52 -1.0
3,034,116 - AO356_13350 0.52 -1.1
3,034,116 - AO356_13350 0.52 -0.6
3,034,116 - AO356_13350 0.52 -1.1
3,034,145 + AO356_13350 0.55 -0.6
3,034,146 - AO356_13350 0.55 -0.9
3,034,146 - AO356_13350 0.55 +0.6
3,034,146 - AO356_13350 0.55 -0.5
3,034,146 - AO356_13350 0.55 -1.7
3,034,166 + AO356_13350 0.57 -1.1
3,034,166 + AO356_13350 0.57 -0.7
3,034,167 - AO356_13350 0.57 -0.9
3,034,167 - AO356_13350 0.57 -1.6
3,034,251 - AO356_13350 0.66 +0.1
3,034,263 - AO356_13350 0.67 -0.4
3,034,263 - AO356_13350 0.67 -0.8
3,034,263 - AO356_13350 0.67 +0.3
3,034,269 + AO356_13350 0.67 -2.1
3,034,269 + AO356_13350 0.67 +0.7
3,034,269 + AO356_13350 0.67 -1.9
3,034,270 - AO356_13350 0.67 -0.9
3,034,270 - AO356_13350 0.67 -1.0
3,034,284 + AO356_13350 0.69 -0.2
3,034,307 + AO356_13350 0.71 +0.1
3,034,307 + AO356_13350 0.71 -0.8
3,034,307 + AO356_13350 0.71 -1.7
3,034,307 + AO356_13350 0.71 -1.6
3,034,307 + AO356_13350 0.71 -0.2
3,034,307 + AO356_13350 0.71 -0.3
3,034,307 + AO356_13350 0.71 -1.0
3,034,307 + AO356_13350 0.71 -0.7
3,034,317 + AO356_13350 0.72 -0.6
3,034,318 - AO356_13350 0.72 +1.5
3,034,318 - AO356_13350 0.72 -0.6
3,034,318 - AO356_13350 0.72 +0.2
3,034,342 + AO356_13350 0.74 -0.4
3,034,342 + AO356_13350 0.74 -1.5
3,034,342 + AO356_13350 0.74 -1.2
3,034,342 + AO356_13350 0.74 -1.5
3,034,342 + AO356_13350 0.74 -0.7
3,034,342 + AO356_13350 0.74 -1.6
3,034,342 + AO356_13350 0.74 -0.6
3,034,342 + AO356_13350 0.74 +0.1
3,034,342 + AO356_13350 0.74 -0.7
3,034,342 + AO356_13350 0.74 +0.2
3,034,342 + AO356_13350 0.74 -1.7
3,034,343 - AO356_13350 0.75 -0.3
3,034,343 - AO356_13350 0.75 -1.2
3,034,343 - AO356_13350 0.75 -0.1
3,034,343 - AO356_13350 0.75 -0.1
3,034,343 - AO356_13350 0.75 +0.1
3,034,343 - AO356_13350 0.75 -1.2
3,034,343 - AO356_13350 0.75 -1.0
3,034,343 - AO356_13350 0.75 -1.2
3,034,343 - AO356_13350 0.75 -0.1
3,034,343 - AO356_13350 0.75 +1.5
3,034,343 - AO356_13350 0.75 -0.2
3,034,343 - AO356_13350 0.75 -0.7
3,034,343 - AO356_13350 0.75 -1.2
3,034,343 - AO356_13350 0.75 -2.3
3,034,343 - AO356_13350 0.75 -0.7
3,034,346 + AO356_13350 0.75 +0.1
3,034,346 + AO356_13350 0.75 -0.6
3,034,346 + AO356_13350 0.75 -0.3
3,034,346 + AO356_13350 0.75 -0.0
3,034,346 + AO356_13350 0.75 -1.1
3,034,346 + AO356_13350 0.75 -0.6
3,034,346 + AO356_13350 0.75 -1.9
3,034,346 + AO356_13350 0.75 -0.2
3,034,346 + AO356_13350 0.75 -0.5
3,034,346 + AO356_13350 0.75 +0.2
3,034,347 - AO356_13350 0.75 +0.3
3,034,347 - AO356_13350 0.75 -0.9
3,034,347 - AO356_13350 0.75 -1.4
3,034,347 - AO356_13350 0.75 -2.1
3,034,347 - AO356_13350 0.75 -3.1
3,034,363 + AO356_13350 0.77 -0.9
3,034,363 + AO356_13350 0.77 -0.7
3,034,363 + AO356_13350 0.77 +0.5
3,034,363 + AO356_13350 0.77 -1.5
3,034,363 + AO356_13350 0.77 -1.2
3,034,363 + AO356_13350 0.77 +0.0
3,034,363 + AO356_13350 0.77 -2.1
3,034,363 + AO356_13350 0.77 -0.9
3,034,363 + AO356_13350 0.77 -2.1
3,034,364 - AO356_13350 0.77 +0.2
3,034,364 - AO356_13350 0.77 -1.1
3,034,364 - AO356_13350 0.77 +0.6
3,034,364 - AO356_13350 0.77 -2.4
3,034,364 - AO356_13350 0.77 -2.5
3,034,364 - AO356_13350 0.77 -1.3
3,034,364 - AO356_13350 0.77 -0.3
3,034,364 - AO356_13350 0.77 -0.4
3,034,364 - AO356_13350 0.77 -1.2
3,034,364 - AO356_13350 0.77 -1.2
3,034,364 - AO356_13350 0.77 -1.2
3,034,364 - AO356_13350 0.77 -2.1
3,034,364 - AO356_13350 0.77 -0.3
3,034,364 - AO356_13350 0.77 -1.0
3,034,364 - AO356_13350 0.77 -1.0
3,034,365 + AO356_13350 0.77 +0.7
3,034,365 + AO356_13350 0.77 +0.9
3,034,365 + AO356_13350 0.77 -0.9
3,034,365 + AO356_13350 0.77 +0.2
3,034,366 - AO356_13350 0.77 -1.6
3,034,378 + AO356_13350 0.78 +0.1
3,034,378 + AO356_13350 0.78 -0.1
3,034,378 + AO356_13350 0.78 +0.1
3,034,378 + AO356_13350 0.78 +0.6
3,034,378 + AO356_13350 0.78 +0.0
3,034,379 - AO356_13350 0.78 +0.1
3,034,379 - AO356_13350 0.78 -1.2
3,034,379 - AO356_13350 0.78 +2.1
3,034,468 + AO356_13350 0.87 +0.2
3,034,469 - AO356_13350 0.87 -0.6
3,034,546 + -0.2
3,034,546 + -1.2
3,034,546 + -1.4
3,034,600 + +0.7
3,034,600 + +0.7
3,034,600 + -0.6
3,034,600 + +0.1
3,034,600 + -0.3
3,034,617 + +0.2
3,034,692 + +0.1
3,034,692 + +0.6
3,034,692 + -0.9
3,034,715 + +0.4

Or see this region's nucleotide sequence