Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_13295

Experiment: 4C survival; 192 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_13290 and AO356_13295 are separated by 148 nucleotidesAO356_13295 and AO356_13300 are separated by 27 nucleotides AO356_13290: AO356_13290 - GMC family oxidoreductase, at 3,020,772 to 3,022,367 _13290 AO356_13295: AO356_13295 - twin-arginine translocation pathway signal protein, at 3,022,516 to 3,023,061 _13295 AO356_13300: AO356_13300 - coniferyl aldehyde dehydrogenase, at 3,023,089 to 3,024,519 _13300 Position (kb) 3022 3023 3024Strain fitness (log2 ratio) -2 -1 0 1 2at 3021.580 kb on + strand, within AO356_13290at 3021.580 kb on + strand, within AO356_13290at 3021.580 kb on + strand, within AO356_13290at 3021.581 kb on - strand, within AO356_13290at 3021.581 kb on - strand, within AO356_13290at 3021.581 kb on - strand, within AO356_13290at 3021.581 kb on - strand, within AO356_13290at 3021.581 kb on - strand, within AO356_13290at 3021.581 kb on - strand, within AO356_13290at 3021.703 kb on + strand, within AO356_13290at 3021.703 kb on + strand, within AO356_13290at 3021.703 kb on + strand, within AO356_13290at 3021.703 kb on + strand, within AO356_13290at 3021.704 kb on - strand, within AO356_13290at 3021.704 kb on - strand, within AO356_13290at 3021.704 kb on - strand, within AO356_13290at 3021.704 kb on - strand, within AO356_13290at 3021.704 kb on - strand, within AO356_13290at 3021.793 kb on + strand, within AO356_13290at 3022.123 kb on + strand, within AO356_13290at 3022.124 kb on - strand, within AO356_13290at 3022.135 kb on + strand, within AO356_13290at 3022.135 kb on + strand, within AO356_13290at 3022.135 kb on + strand, within AO356_13290at 3022.135 kb on + strand, within AO356_13290at 3022.135 kb on + strand, within AO356_13290at 3022.136 kb on - strand, within AO356_13290at 3022.136 kb on - strand, within AO356_13290at 3022.315 kb on + strandat 3022.315 kb on + strandat 3022.315 kb on + strandat 3022.316 kb on - strandat 3022.316 kb on - strandat 3022.316 kb on - strandat 3022.316 kb on - strandat 3022.316 kb on - strandat 3022.316 kb on - strandat 3022.382 kb on + strandat 3022.382 kb on + strandat 3022.382 kb on + strandat 3022.383 kb on - strandat 3022.383 kb on - strandat 3022.383 kb on - strandat 3022.383 kb on - strandat 3022.383 kb on - strandat 3022.402 kb on - strandat 3022.402 kb on - strandat 3022.402 kb on - strandat 3022.402 kb on - strandat 3022.439 kb on + strandat 3022.439 kb on + strandat 3022.440 kb on - strandat 3022.440 kb on - strandat 3022.440 kb on - strandat 3022.440 kb on - strandat 3022.441 kb on + strandat 3022.441 kb on + strandat 3022.441 kb on + strandat 3022.441 kb on + strandat 3022.441 kb on + strandat 3022.442 kb on - strandat 3022.442 kb on - strandat 3022.456 kb on - strandat 3022.456 kb on - strandat 3022.571 kb on + strand, within AO356_13295at 3022.571 kb on + strand, within AO356_13295at 3022.572 kb on - strand, within AO356_13295at 3022.572 kb on - strand, within AO356_13295at 3022.572 kb on - strand, within AO356_13295at 3022.618 kb on + strand, within AO356_13295at 3022.618 kb on + strand, within AO356_13295at 3022.619 kb on - strand, within AO356_13295at 3023.145 kb on - strandat 3023.228 kb on + strandat 3023.228 kb on + strandat 3023.228 kb on + strandat 3023.229 kb on - strandat 3023.360 kb on + strand, within AO356_13300at 3023.360 kb on + strand, within AO356_13300at 3023.361 kb on - strand, within AO356_13300at 3023.361 kb on - strand, within AO356_13300at 3023.369 kb on + strand, within AO356_13300at 3023.369 kb on + strand, within AO356_13300at 3023.369 kb on + strand, within AO356_13300at 3023.369 kb on + strand, within AO356_13300at 3023.369 kb on + strand, within AO356_13300at 3023.369 kb on + strand, within AO356_13300at 3023.369 kb on + strand, within AO356_13300at 3023.370 kb on - strand, within AO356_13300at 3023.370 kb on - strand, within AO356_13300at 3023.370 kb on - strand, within AO356_13300at 3023.372 kb on + strand, within AO356_13300at 3023.372 kb on + strand, within AO356_13300at 3023.372 kb on + strand, within AO356_13300at 3023.372 kb on + strand, within AO356_13300at 3023.373 kb on - strand, within AO356_13300at 3023.373 kb on - strand, within AO356_13300at 3023.373 kb on - strand, within AO356_13300at 3023.405 kb on + strand, within AO356_13300at 3023.405 kb on + strand, within AO356_13300at 3023.405 kb on + strand, within AO356_13300at 3023.405 kb on + strand, within AO356_13300at 3023.405 kb on + strand, within AO356_13300at 3023.406 kb on - strand, within AO356_13300at 3023.406 kb on - strand, within AO356_13300at 3023.432 kb on + strand, within AO356_13300at 3023.433 kb on - strand, within AO356_13300at 3023.588 kb on + strand, within AO356_13300at 3023.589 kb on - strand, within AO356_13300at 3023.589 kb on - strand, within AO356_13300at 3023.589 kb on - strand, within AO356_13300at 3023.633 kb on + strand, within AO356_13300at 3023.633 kb on + strand, within AO356_13300at 3023.633 kb on + strand, within AO356_13300at 3023.634 kb on - strand, within AO356_13300at 3023.634 kb on - strand, within AO356_13300at 3023.634 kb on - strand, within AO356_13300at 3023.660 kb on + strand, within AO356_13300at 3023.661 kb on - strand, within AO356_13300at 3023.685 kb on - strand, within AO356_13300at 3023.729 kb on + strand, within AO356_13300at 3023.729 kb on + strand, within AO356_13300at 3023.729 kb on + strand, within AO356_13300at 3023.729 kb on + strand, within AO356_13300at 3023.730 kb on - strand, within AO356_13300at 3023.730 kb on - strand, within AO356_13300at 3023.730 kb on - strand, within AO356_13300at 3023.730 kb on - strand, within AO356_13300at 3023.730 kb on - strand, within AO356_13300at 3023.730 kb on - strand, within AO356_13300at 3023.806 kb on + strand, within AO356_13300at 3023.806 kb on + strand, within AO356_13300at 3023.806 kb on + strand, within AO356_13300at 3023.806 kb on + strand, within AO356_13300at 3023.806 kb on + strand, within AO356_13300at 3023.806 kb on + strand, within AO356_13300at 3023.807 kb on - strand, within AO356_13300at 3023.807 kb on - strand, within AO356_13300at 3023.807 kb on - strand, within AO356_13300at 3023.807 kb on - strand, within AO356_13300

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 192 hrs
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3,021,580 + AO356_13290 0.51 -0.3
3,021,580 + AO356_13290 0.51 +0.5
3,021,580 + AO356_13290 0.51 +1.6
3,021,581 - AO356_13290 0.51 +0.2
3,021,581 - AO356_13290 0.51 -0.2
3,021,581 - AO356_13290 0.51 +0.6
3,021,581 - AO356_13290 0.51 -0.1
3,021,581 - AO356_13290 0.51 +0.9
3,021,581 - AO356_13290 0.51 -1.7
3,021,703 + AO356_13290 0.58 +1.5
3,021,703 + AO356_13290 0.58 -1.1
3,021,703 + AO356_13290 0.58 +0.9
3,021,703 + AO356_13290 0.58 -0.8
3,021,704 - AO356_13290 0.58 +0.4
3,021,704 - AO356_13290 0.58 -0.9
3,021,704 - AO356_13290 0.58 -0.8
3,021,704 - AO356_13290 0.58 -0.3
3,021,704 - AO356_13290 0.58 -0.0
3,021,793 + AO356_13290 0.64 -0.2
3,022,123 + AO356_13290 0.85 +1.5
3,022,124 - AO356_13290 0.85 +1.1
3,022,135 + AO356_13290 0.85 -0.3
3,022,135 + AO356_13290 0.85 +0.3
3,022,135 + AO356_13290 0.85 +1.5
3,022,135 + AO356_13290 0.85 -0.7
3,022,135 + AO356_13290 0.85 +0.6
3,022,136 - AO356_13290 0.85 -0.5
3,022,136 - AO356_13290 0.85 +0.4
3,022,315 + -0.4
3,022,315 + -0.9
3,022,315 + -1.8
3,022,316 - +0.2
3,022,316 - +0.0
3,022,316 - +0.1
3,022,316 - +0.1
3,022,316 - -0.5
3,022,316 - +0.9
3,022,382 + -1.6
3,022,382 + -0.8
3,022,382 + +0.3
3,022,383 - +0.6
3,022,383 - -0.5
3,022,383 - -0.2
3,022,383 - +0.1
3,022,383 - +0.9
3,022,402 - -0.5
3,022,402 - +0.8
3,022,402 - +0.4
3,022,402 - -0.5
3,022,439 + +0.7
3,022,439 + +0.3
3,022,440 - -0.8
3,022,440 - +0.3
3,022,440 - +0.1
3,022,440 - -0.4
3,022,441 + -0.6
3,022,441 + -0.4
3,022,441 + +0.2
3,022,441 + -0.4
3,022,441 + +0.1
3,022,442 - -0.5
3,022,442 - -0.1
3,022,456 - +0.0
3,022,456 - -0.5
3,022,571 + AO356_13295 0.10 +0.4
3,022,571 + AO356_13295 0.10 +0.2
3,022,572 - AO356_13295 0.10 +0.9
3,022,572 - AO356_13295 0.10 -0.7
3,022,572 - AO356_13295 0.10 +0.9
3,022,618 + AO356_13295 0.19 +0.6
3,022,618 + AO356_13295 0.19 +1.4
3,022,619 - AO356_13295 0.19 -2.5
3,023,145 - -0.7
3,023,228 + -0.0
3,023,228 + -0.8
3,023,228 + +0.1
3,023,229 - -0.8
3,023,360 + AO356_13300 0.19 +0.1
3,023,360 + AO356_13300 0.19 -0.3
3,023,361 - AO356_13300 0.19 +1.7
3,023,361 - AO356_13300 0.19 -1.2
3,023,369 + AO356_13300 0.20 -0.4
3,023,369 + AO356_13300 0.20 +0.9
3,023,369 + AO356_13300 0.20 -0.2
3,023,369 + AO356_13300 0.20 +0.5
3,023,369 + AO356_13300 0.20 +1.0
3,023,369 + AO356_13300 0.20 -0.3
3,023,369 + AO356_13300 0.20 -1.1
3,023,370 - AO356_13300 0.20 +1.5
3,023,370 - AO356_13300 0.20 -0.6
3,023,370 - AO356_13300 0.20 +0.6
3,023,372 + AO356_13300 0.20 +0.4
3,023,372 + AO356_13300 0.20 +0.3
3,023,372 + AO356_13300 0.20 -0.1
3,023,372 + AO356_13300 0.20 -0.2
3,023,373 - AO356_13300 0.20 -0.5
3,023,373 - AO356_13300 0.20 -0.2
3,023,373 - AO356_13300 0.20 -0.8
3,023,405 + AO356_13300 0.22 -0.6
3,023,405 + AO356_13300 0.22 -0.5
3,023,405 + AO356_13300 0.22 +0.2
3,023,405 + AO356_13300 0.22 +0.3
3,023,405 + AO356_13300 0.22 -0.0
3,023,406 - AO356_13300 0.22 -0.9
3,023,406 - AO356_13300 0.22 +0.3
3,023,432 + AO356_13300 0.24 -0.4
3,023,433 - AO356_13300 0.24 +0.3
3,023,588 + AO356_13300 0.35 -0.0
3,023,589 - AO356_13300 0.35 -0.6
3,023,589 - AO356_13300 0.35 +0.2
3,023,589 - AO356_13300 0.35 -1.0
3,023,633 + AO356_13300 0.38 +0.5
3,023,633 + AO356_13300 0.38 -0.1
3,023,633 + AO356_13300 0.38 +0.8
3,023,634 - AO356_13300 0.38 +0.2
3,023,634 - AO356_13300 0.38 -0.4
3,023,634 - AO356_13300 0.38 +0.1
3,023,660 + AO356_13300 0.40 -1.3
3,023,661 - AO356_13300 0.40 +1.0
3,023,685 - AO356_13300 0.42 -2.5
3,023,729 + AO356_13300 0.45 -0.7
3,023,729 + AO356_13300 0.45 +0.2
3,023,729 + AO356_13300 0.45 +0.7
3,023,729 + AO356_13300 0.45 +0.2
3,023,730 - AO356_13300 0.45 +0.5
3,023,730 - AO356_13300 0.45 +0.6
3,023,730 - AO356_13300 0.45 +0.2
3,023,730 - AO356_13300 0.45 -0.2
3,023,730 - AO356_13300 0.45 +0.6
3,023,730 - AO356_13300 0.45 -0.6
3,023,806 + AO356_13300 0.50 +0.7
3,023,806 + AO356_13300 0.50 -0.2
3,023,806 + AO356_13300 0.50 +0.3
3,023,806 + AO356_13300 0.50 -0.3
3,023,806 + AO356_13300 0.50 +0.0
3,023,806 + AO356_13300 0.50 -0.1
3,023,807 - AO356_13300 0.50 -0.5
3,023,807 - AO356_13300 0.50 +0.7
3,023,807 - AO356_13300 0.50 +2.1
3,023,807 - AO356_13300 0.50 +0.3

Or see this region's nucleotide sequence