Experiment: 4C survival; 192 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_13290 and AO356_13295 are separated by 148 nucleotides AO356_13295 and AO356_13300 are separated by 27 nucleotides
AO356_13290: AO356_13290 - GMC family oxidoreductase, at 3,020,772 to 3,022,367
_13290
AO356_13295: AO356_13295 - twin-arginine translocation pathway signal protein, at 3,022,516 to 3,023,061
_13295
AO356_13300: AO356_13300 - coniferyl aldehyde dehydrogenase, at 3,023,089 to 3,024,519
_13300
Position (kb)
3022
3023
3024 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3021.580 kb on + strand, within AO356_13290 at 3021.580 kb on + strand, within AO356_13290 at 3021.580 kb on + strand, within AO356_13290 at 3021.581 kb on - strand, within AO356_13290 at 3021.581 kb on - strand, within AO356_13290 at 3021.581 kb on - strand, within AO356_13290 at 3021.581 kb on - strand, within AO356_13290 at 3021.581 kb on - strand, within AO356_13290 at 3021.581 kb on - strand, within AO356_13290 at 3021.703 kb on + strand, within AO356_13290 at 3021.703 kb on + strand, within AO356_13290 at 3021.703 kb on + strand, within AO356_13290 at 3021.703 kb on + strand, within AO356_13290 at 3021.704 kb on - strand, within AO356_13290 at 3021.704 kb on - strand, within AO356_13290 at 3021.704 kb on - strand, within AO356_13290 at 3021.704 kb on - strand, within AO356_13290 at 3021.704 kb on - strand, within AO356_13290 at 3021.793 kb on + strand, within AO356_13290 at 3022.123 kb on + strand, within AO356_13290 at 3022.124 kb on - strand, within AO356_13290 at 3022.135 kb on + strand, within AO356_13290 at 3022.135 kb on + strand, within AO356_13290 at 3022.135 kb on + strand, within AO356_13290 at 3022.135 kb on + strand, within AO356_13290 at 3022.135 kb on + strand, within AO356_13290 at 3022.136 kb on - strand, within AO356_13290 at 3022.136 kb on - strand, within AO356_13290 at 3022.315 kb on + strand at 3022.315 kb on + strand at 3022.315 kb on + strand at 3022.316 kb on - strand at 3022.316 kb on - strand at 3022.316 kb on - strand at 3022.316 kb on - strand at 3022.316 kb on - strand at 3022.316 kb on - strand at 3022.382 kb on + strand at 3022.382 kb on + strand at 3022.382 kb on + strand at 3022.383 kb on - strand at 3022.383 kb on - strand at 3022.383 kb on - strand at 3022.383 kb on - strand at 3022.383 kb on - strand at 3022.402 kb on - strand at 3022.402 kb on - strand at 3022.402 kb on - strand at 3022.402 kb on - strand at 3022.439 kb on + strand at 3022.439 kb on + strand at 3022.440 kb on - strand at 3022.440 kb on - strand at 3022.440 kb on - strand at 3022.440 kb on - strand at 3022.441 kb on + strand at 3022.441 kb on + strand at 3022.441 kb on + strand at 3022.441 kb on + strand at 3022.441 kb on + strand at 3022.442 kb on - strand at 3022.442 kb on - strand at 3022.456 kb on - strand at 3022.456 kb on - strand at 3022.571 kb on + strand, within AO356_13295 at 3022.571 kb on + strand, within AO356_13295 at 3022.572 kb on - strand, within AO356_13295 at 3022.572 kb on - strand, within AO356_13295 at 3022.572 kb on - strand, within AO356_13295 at 3022.618 kb on + strand, within AO356_13295 at 3022.618 kb on + strand, within AO356_13295 at 3022.619 kb on - strand, within AO356_13295 at 3023.145 kb on - strand at 3023.228 kb on + strand at 3023.228 kb on + strand at 3023.228 kb on + strand at 3023.229 kb on - strand at 3023.360 kb on + strand, within AO356_13300 at 3023.360 kb on + strand, within AO356_13300 at 3023.361 kb on - strand, within AO356_13300 at 3023.361 kb on - strand, within AO356_13300 at 3023.369 kb on + strand, within AO356_13300 at 3023.369 kb on + strand, within AO356_13300 at 3023.369 kb on + strand, within AO356_13300 at 3023.369 kb on + strand, within AO356_13300 at 3023.369 kb on + strand, within AO356_13300 at 3023.369 kb on + strand, within AO356_13300 at 3023.369 kb on + strand, within AO356_13300 at 3023.370 kb on - strand, within AO356_13300 at 3023.370 kb on - strand, within AO356_13300 at 3023.370 kb on - strand, within AO356_13300 at 3023.372 kb on + strand, within AO356_13300 at 3023.372 kb on + strand, within AO356_13300 at 3023.372 kb on + strand, within AO356_13300 at 3023.372 kb on + strand, within AO356_13300 at 3023.373 kb on - strand, within AO356_13300 at 3023.373 kb on - strand, within AO356_13300 at 3023.373 kb on - strand, within AO356_13300 at 3023.405 kb on + strand, within AO356_13300 at 3023.405 kb on + strand, within AO356_13300 at 3023.405 kb on + strand, within AO356_13300 at 3023.405 kb on + strand, within AO356_13300 at 3023.405 kb on + strand, within AO356_13300 at 3023.406 kb on - strand, within AO356_13300 at 3023.406 kb on - strand, within AO356_13300 at 3023.432 kb on + strand, within AO356_13300 at 3023.433 kb on - strand, within AO356_13300 at 3023.588 kb on + strand, within AO356_13300 at 3023.589 kb on - strand, within AO356_13300 at 3023.589 kb on - strand, within AO356_13300 at 3023.589 kb on - strand, within AO356_13300 at 3023.633 kb on + strand, within AO356_13300 at 3023.633 kb on + strand, within AO356_13300 at 3023.633 kb on + strand, within AO356_13300 at 3023.634 kb on - strand, within AO356_13300 at 3023.634 kb on - strand, within AO356_13300 at 3023.634 kb on - strand, within AO356_13300 at 3023.660 kb on + strand, within AO356_13300 at 3023.661 kb on - strand, within AO356_13300 at 3023.685 kb on - strand, within AO356_13300 at 3023.729 kb on + strand, within AO356_13300 at 3023.729 kb on + strand, within AO356_13300 at 3023.729 kb on + strand, within AO356_13300 at 3023.729 kb on + strand, within AO356_13300 at 3023.730 kb on - strand, within AO356_13300 at 3023.730 kb on - strand, within AO356_13300 at 3023.730 kb on - strand, within AO356_13300 at 3023.730 kb on - strand, within AO356_13300 at 3023.730 kb on - strand, within AO356_13300 at 3023.730 kb on - strand, within AO356_13300 at 3023.806 kb on + strand, within AO356_13300 at 3023.806 kb on + strand, within AO356_13300 at 3023.806 kb on + strand, within AO356_13300 at 3023.806 kb on + strand, within AO356_13300 at 3023.806 kb on + strand, within AO356_13300 at 3023.806 kb on + strand, within AO356_13300 at 3023.807 kb on - strand, within AO356_13300 at 3023.807 kb on - strand, within AO356_13300 at 3023.807 kb on - strand, within AO356_13300 at 3023.807 kb on - strand, within AO356_13300
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 192 hrs remove 3,021,580 + AO356_13290 0.51 -0.3 3,021,580 + AO356_13290 0.51 +0.5 3,021,580 + AO356_13290 0.51 +1.6 3,021,581 - AO356_13290 0.51 +0.2 3,021,581 - AO356_13290 0.51 -0.2 3,021,581 - AO356_13290 0.51 +0.6 3,021,581 - AO356_13290 0.51 -0.1 3,021,581 - AO356_13290 0.51 +0.9 3,021,581 - AO356_13290 0.51 -1.7 3,021,703 + AO356_13290 0.58 +1.5 3,021,703 + AO356_13290 0.58 -1.1 3,021,703 + AO356_13290 0.58 +0.9 3,021,703 + AO356_13290 0.58 -0.8 3,021,704 - AO356_13290 0.58 +0.4 3,021,704 - AO356_13290 0.58 -0.9 3,021,704 - AO356_13290 0.58 -0.8 3,021,704 - AO356_13290 0.58 -0.3 3,021,704 - AO356_13290 0.58 -0.0 3,021,793 + AO356_13290 0.64 -0.2 3,022,123 + AO356_13290 0.85 +1.5 3,022,124 - AO356_13290 0.85 +1.1 3,022,135 + AO356_13290 0.85 -0.3 3,022,135 + AO356_13290 0.85 +0.3 3,022,135 + AO356_13290 0.85 +1.5 3,022,135 + AO356_13290 0.85 -0.7 3,022,135 + AO356_13290 0.85 +0.6 3,022,136 - AO356_13290 0.85 -0.5 3,022,136 - AO356_13290 0.85 +0.4 3,022,315 + -0.4 3,022,315 + -0.9 3,022,315 + -1.8 3,022,316 - +0.2 3,022,316 - +0.0 3,022,316 - +0.1 3,022,316 - +0.1 3,022,316 - -0.5 3,022,316 - +0.9 3,022,382 + -1.6 3,022,382 + -0.8 3,022,382 + +0.3 3,022,383 - +0.6 3,022,383 - -0.5 3,022,383 - -0.2 3,022,383 - +0.1 3,022,383 - +0.9 3,022,402 - -0.5 3,022,402 - +0.8 3,022,402 - +0.4 3,022,402 - -0.5 3,022,439 + +0.7 3,022,439 + +0.3 3,022,440 - -0.8 3,022,440 - +0.3 3,022,440 - +0.1 3,022,440 - -0.4 3,022,441 + -0.6 3,022,441 + -0.4 3,022,441 + +0.2 3,022,441 + -0.4 3,022,441 + +0.1 3,022,442 - -0.5 3,022,442 - -0.1 3,022,456 - +0.0 3,022,456 - -0.5 3,022,571 + AO356_13295 0.10 +0.4 3,022,571 + AO356_13295 0.10 +0.2 3,022,572 - AO356_13295 0.10 +0.9 3,022,572 - AO356_13295 0.10 -0.7 3,022,572 - AO356_13295 0.10 +0.9 3,022,618 + AO356_13295 0.19 +0.6 3,022,618 + AO356_13295 0.19 +1.4 3,022,619 - AO356_13295 0.19 -2.5 3,023,145 - -0.7 3,023,228 + -0.0 3,023,228 + -0.8 3,023,228 + +0.1 3,023,229 - -0.8 3,023,360 + AO356_13300 0.19 +0.1 3,023,360 + AO356_13300 0.19 -0.3 3,023,361 - AO356_13300 0.19 +1.7 3,023,361 - AO356_13300 0.19 -1.2 3,023,369 + AO356_13300 0.20 -0.4 3,023,369 + AO356_13300 0.20 +0.9 3,023,369 + AO356_13300 0.20 -0.2 3,023,369 + AO356_13300 0.20 +0.5 3,023,369 + AO356_13300 0.20 +1.0 3,023,369 + AO356_13300 0.20 -0.3 3,023,369 + AO356_13300 0.20 -1.1 3,023,370 - AO356_13300 0.20 +1.5 3,023,370 - AO356_13300 0.20 -0.6 3,023,370 - AO356_13300 0.20 +0.6 3,023,372 + AO356_13300 0.20 +0.4 3,023,372 + AO356_13300 0.20 +0.3 3,023,372 + AO356_13300 0.20 -0.1 3,023,372 + AO356_13300 0.20 -0.2 3,023,373 - AO356_13300 0.20 -0.5 3,023,373 - AO356_13300 0.20 -0.2 3,023,373 - AO356_13300 0.20 -0.8 3,023,405 + AO356_13300 0.22 -0.6 3,023,405 + AO356_13300 0.22 -0.5 3,023,405 + AO356_13300 0.22 +0.2 3,023,405 + AO356_13300 0.22 +0.3 3,023,405 + AO356_13300 0.22 -0.0 3,023,406 - AO356_13300 0.22 -0.9 3,023,406 - AO356_13300 0.22 +0.3 3,023,432 + AO356_13300 0.24 -0.4 3,023,433 - AO356_13300 0.24 +0.3 3,023,588 + AO356_13300 0.35 -0.0 3,023,589 - AO356_13300 0.35 -0.6 3,023,589 - AO356_13300 0.35 +0.2 3,023,589 - AO356_13300 0.35 -1.0 3,023,633 + AO356_13300 0.38 +0.5 3,023,633 + AO356_13300 0.38 -0.1 3,023,633 + AO356_13300 0.38 +0.8 3,023,634 - AO356_13300 0.38 +0.2 3,023,634 - AO356_13300 0.38 -0.4 3,023,634 - AO356_13300 0.38 +0.1 3,023,660 + AO356_13300 0.40 -1.3 3,023,661 - AO356_13300 0.40 +1.0 3,023,685 - AO356_13300 0.42 -2.5 3,023,729 + AO356_13300 0.45 -0.7 3,023,729 + AO356_13300 0.45 +0.2 3,023,729 + AO356_13300 0.45 +0.7 3,023,729 + AO356_13300 0.45 +0.2 3,023,730 - AO356_13300 0.45 +0.5 3,023,730 - AO356_13300 0.45 +0.6 3,023,730 - AO356_13300 0.45 +0.2 3,023,730 - AO356_13300 0.45 -0.2 3,023,730 - AO356_13300 0.45 +0.6 3,023,730 - AO356_13300 0.45 -0.6 3,023,806 + AO356_13300 0.50 +0.7 3,023,806 + AO356_13300 0.50 -0.2 3,023,806 + AO356_13300 0.50 +0.3 3,023,806 + AO356_13300 0.50 -0.3 3,023,806 + AO356_13300 0.50 +0.0 3,023,806 + AO356_13300 0.50 -0.1 3,023,807 - AO356_13300 0.50 -0.5 3,023,807 - AO356_13300 0.50 +0.7 3,023,807 - AO356_13300 0.50 +2.1 3,023,807 - AO356_13300 0.50 +0.3
Or see this region's nucleotide sequence