Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_12895

Experiment: 4C survival; 192 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_12890 and AO356_12895 are separated by 17 nucleotidesAO356_12895 and AO356_12900 are separated by 78 nucleotides AO356_12890: AO356_12890 - delta-aminolevulinic acid dehydratase, at 2,934,145 to 2,935,158 _12890 AO356_12895: AO356_12895 - polyphosphate kinase, at 2,935,176 to 2,937,392 _12895 AO356_12900: AO356_12900 - exopolyphosphatase, at 2,937,471 to 2,938,973 _12900 Position (kb) 2935 2936 2937 2938Strain fitness (log2 ratio) -1 0 1 2at 2934.270 kb on - strand, within AO356_12890at 2934.584 kb on - strand, within AO356_12890at 2934.584 kb on - strand, within AO356_12890at 2934.748 kb on + strand, within AO356_12890at 2934.760 kb on + strand, within AO356_12890at 2934.760 kb on + strand, within AO356_12890at 2934.761 kb on - strand, within AO356_12890at 2934.761 kb on - strand, within AO356_12890at 2934.761 kb on - strand, within AO356_12890at 2934.772 kb on + strand, within AO356_12890at 2934.773 kb on - strand, within AO356_12890at 2934.773 kb on - strand, within AO356_12890at 2934.773 kb on - strand, within AO356_12890at 2934.773 kb on - strand, within AO356_12890at 2934.773 kb on - strand, within AO356_12890at 2934.775 kb on + strand, within AO356_12890at 2934.776 kb on - strand, within AO356_12890at 2934.776 kb on - strand, within AO356_12890at 2934.838 kb on + strand, within AO356_12890at 2934.839 kb on - strand, within AO356_12890at 2934.839 kb on - strand, within AO356_12890at 2934.937 kb on + strand, within AO356_12890at 2934.938 kb on - strand, within AO356_12890at 2934.938 kb on - strand, within AO356_12890at 2934.992 kb on - strand, within AO356_12890at 2934.992 kb on - strand, within AO356_12890at 2935.009 kb on + strand, within AO356_12890at 2935.010 kb on - strand, within AO356_12890at 2935.114 kb on + strandat 2935.114 kb on + strandat 2935.114 kb on + strandat 2935.114 kb on + strandat 2935.114 kb on + strandat 2935.114 kb on + strandat 2935.114 kb on + strandat 2935.115 kb on - strandat 2935.115 kb on - strandat 2935.115 kb on - strandat 2935.115 kb on - strandat 2935.115 kb on - strandat 2935.115 kb on - strandat 2935.115 kb on - strandat 2935.142 kb on + strandat 2935.142 kb on + strandat 2935.156 kb on + strandat 2935.157 kb on - strandat 2935.157 kb on - strandat 2935.157 kb on - strandat 2935.182 kb on - strandat 2935.182 kb on - strandat 2935.338 kb on + strandat 2935.338 kb on + strandat 2935.338 kb on + strandat 2935.338 kb on + strandat 2935.338 kb on + strandat 2935.338 kb on + strandat 2935.338 kb on + strandat 2935.338 kb on + strandat 2935.338 kb on + strandat 2935.338 kb on + strandat 2935.339 kb on - strandat 2935.339 kb on - strandat 2935.339 kb on - strandat 2935.339 kb on - strandat 2935.339 kb on - strandat 2935.339 kb on - strandat 2935.339 kb on - strandat 2935.339 kb on - strandat 2935.408 kb on - strand, within AO356_12895at 2935.669 kb on - strand, within AO356_12895at 2935.705 kb on - strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.920 kb on + strand, within AO356_12895at 2935.921 kb on - strand, within AO356_12895at 2935.921 kb on - strand, within AO356_12895at 2935.921 kb on - strand, within AO356_12895at 2935.921 kb on - strand, within AO356_12895at 2935.921 kb on - strand, within AO356_12895at 2935.921 kb on - strand, within AO356_12895at 2935.921 kb on - strand, within AO356_12895at 2935.921 kb on - strand, within AO356_12895at 2935.921 kb on - strand, within AO356_12895at 2935.921 kb on - strand, within AO356_12895at 2935.921 kb on - strand, within AO356_12895at 2935.921 kb on - strand, within AO356_12895at 2935.921 kb on - strand, within AO356_12895at 2935.993 kb on - strand, within AO356_12895at 2935.993 kb on - strand, within AO356_12895at 2935.993 kb on - strand, within AO356_12895at 2936.148 kb on + strand, within AO356_12895at 2936.148 kb on + strand, within AO356_12895at 2936.187 kb on + strand, within AO356_12895at 2936.187 kb on + strand, within AO356_12895at 2936.188 kb on - strand, within AO356_12895at 2936.188 kb on - strand, within AO356_12895at 2936.188 kb on - strand, within AO356_12895at 2936.188 kb on - strand, within AO356_12895at 2936.188 kb on - strand, within AO356_12895at 2936.188 kb on - strand, within AO356_12895at 2936.262 kb on + strand, within AO356_12895at 2936.262 kb on + strand, within AO356_12895at 2936.262 kb on + strand, within AO356_12895at 2936.262 kb on + strand, within AO356_12895at 2936.263 kb on - strand, within AO356_12895at 2936.263 kb on - strand, within AO356_12895at 2936.263 kb on - strand, within AO356_12895at 2936.263 kb on - strand, within AO356_12895at 2936.439 kb on + strand, within AO356_12895at 2936.598 kb on + strand, within AO356_12895at 2936.598 kb on + strand, within AO356_12895at 2936.598 kb on + strand, within AO356_12895at 2936.598 kb on + strand, within AO356_12895at 2936.598 kb on + strand, within AO356_12895at 2936.598 kb on + strand, within AO356_12895at 2936.598 kb on + strand, within AO356_12895at 2936.598 kb on + strand, within AO356_12895at 2936.598 kb on + strand, within AO356_12895at 2936.599 kb on - strand, within AO356_12895at 2936.599 kb on - strand, within AO356_12895at 2936.599 kb on - strand, within AO356_12895at 2936.673 kb on + strand, within AO356_12895at 2936.697 kb on + strand, within AO356_12895at 2936.697 kb on + strand, within AO356_12895at 2936.697 kb on + strand, within AO356_12895at 2936.697 kb on + strand, within AO356_12895at 2936.698 kb on - strand, within AO356_12895at 2936.698 kb on - strand, within AO356_12895at 2936.698 kb on - strand, within AO356_12895at 2936.698 kb on - strand, within AO356_12895at 2936.698 kb on - strand, within AO356_12895at 2936.698 kb on - strand, within AO356_12895at 2936.698 kb on - strand, within AO356_12895at 2936.698 kb on - strand, within AO356_12895at 2936.721 kb on + strand, within AO356_12895at 2936.721 kb on + strand, within AO356_12895at 2936.721 kb on + strand, within AO356_12895at 2936.721 kb on + strand, within AO356_12895at 2936.730 kb on + strand, within AO356_12895at 2936.730 kb on + strand, within AO356_12895at 2936.731 kb on - strand, within AO356_12895at 2936.731 kb on - strand, within AO356_12895at 2936.731 kb on - strand, within AO356_12895at 2936.967 kb on + strand, within AO356_12895at 2936.967 kb on + strand, within AO356_12895at 2936.967 kb on + strand, within AO356_12895at 2936.967 kb on + strand, within AO356_12895at 2936.967 kb on + strand, within AO356_12895at 2936.968 kb on - strand, within AO356_12895at 2936.968 kb on - strand, within AO356_12895at 2936.968 kb on - strand, within AO356_12895at 2936.968 kb on - strand, within AO356_12895at 2936.968 kb on - strand, within AO356_12895at 2936.968 kb on - strand, within AO356_12895at 2936.968 kb on - strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.064 kb on + strand, within AO356_12895at 2937.065 kb on - strand, within AO356_12895at 2937.065 kb on - strand, within AO356_12895at 2937.065 kb on - strand, within AO356_12895at 2937.065 kb on - strand, within AO356_12895at 2937.065 kb on - strand, within AO356_12895at 2937.065 kb on - strand, within AO356_12895at 2937.065 kb on - strand, within AO356_12895at 2937.065 kb on - strand, within AO356_12895at 2937.108 kb on + strand, within AO356_12895at 2937.108 kb on + strand, within AO356_12895at 2937.108 kb on + strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.109 kb on - strand, within AO356_12895at 2937.249 kb on + strandat 2937.249 kb on + strandat 2937.249 kb on + strandat 2937.280 kb on + strandat 2937.280 kb on + strandat 2937.281 kb on - strandat 2937.281 kb on - strandat 2937.281 kb on - strandat 2937.297 kb on + strandat 2937.297 kb on + strandat 2937.298 kb on - strandat 2937.298 kb on - strandat 2937.298 kb on - strandat 2937.298 kb on - strandat 2937.391 kb on - strandat 2937.391 kb on - strandat 2937.462 kb on + strandat 2937.463 kb on - strandat 2937.463 kb on - strandat 2937.463 kb on - strandat 2937.670 kb on - strand, within AO356_12900at 2937.719 kb on + strand, within AO356_12900at 2937.719 kb on + strand, within AO356_12900at 2937.720 kb on - strand, within AO356_12900at 2937.756 kb on + strand, within AO356_12900at 2937.757 kb on - strand, within AO356_12900at 2937.817 kb on + strand, within AO356_12900at 2937.817 kb on + strand, within AO356_12900at 2937.842 kb on - strand, within AO356_12900at 2937.997 kb on + strand, within AO356_12900at 2938.067 kb on - strand, within AO356_12900

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 192 hrs
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2,934,270 - AO356_12890 0.12 +0.6
2,934,584 - AO356_12890 0.43 +0.1
2,934,584 - AO356_12890 0.43 +0.4
2,934,748 + AO356_12890 0.59 -0.3
2,934,760 + AO356_12890 0.61 -0.6
2,934,760 + AO356_12890 0.61 +0.2
2,934,761 - AO356_12890 0.61 +1.5
2,934,761 - AO356_12890 0.61 +0.1
2,934,761 - AO356_12890 0.61 +0.8
2,934,772 + AO356_12890 0.62 +0.6
2,934,773 - AO356_12890 0.62 -0.1
2,934,773 - AO356_12890 0.62 -1.0
2,934,773 - AO356_12890 0.62 +0.8
2,934,773 - AO356_12890 0.62 +0.5
2,934,773 - AO356_12890 0.62 +1.0
2,934,775 + AO356_12890 0.62 -0.1
2,934,776 - AO356_12890 0.62 +1.1
2,934,776 - AO356_12890 0.62 +0.4
2,934,838 + AO356_12890 0.68 +1.0
2,934,839 - AO356_12890 0.68 -0.0
2,934,839 - AO356_12890 0.68 +0.9
2,934,937 + AO356_12890 0.78 -0.2
2,934,938 - AO356_12890 0.78 +0.4
2,934,938 - AO356_12890 0.78 +0.8
2,934,992 - AO356_12890 0.84 +0.3
2,934,992 - AO356_12890 0.84 +0.7
2,935,009 + AO356_12890 0.85 +0.2
2,935,010 - AO356_12890 0.85 +1.2
2,935,114 + +0.9
2,935,114 + -0.9
2,935,114 + -1.5
2,935,114 + +0.2
2,935,114 + -0.4
2,935,114 + -0.2
2,935,114 + -0.3
2,935,115 - +1.3
2,935,115 - +1.9
2,935,115 - +1.7
2,935,115 - +0.5
2,935,115 - +0.3
2,935,115 - +1.6
2,935,115 - +0.6
2,935,142 + +0.3
2,935,142 + +0.2
2,935,156 + -0.4
2,935,157 - +1.9
2,935,157 - +1.3
2,935,157 - +2.1
2,935,182 - +1.3
2,935,182 - +1.0
2,935,338 + +2.4
2,935,338 + +2.7
2,935,338 + +1.8
2,935,338 + +1.0
2,935,338 + +1.9
2,935,338 + +1.8
2,935,338 + +1.8
2,935,338 + +1.6
2,935,338 + +2.2
2,935,338 + +1.7
2,935,339 - +1.4
2,935,339 - +2.1
2,935,339 - +1.5
2,935,339 - +1.1
2,935,339 - +1.1
2,935,339 - +1.1
2,935,339 - +2.0
2,935,339 - +1.6
2,935,408 - AO356_12895 0.10 +1.7
2,935,669 - AO356_12895 0.22 +1.6
2,935,705 - AO356_12895 0.24 +1.3
2,935,920 + AO356_12895 0.34 +1.8
2,935,920 + AO356_12895 0.34 +0.7
2,935,920 + AO356_12895 0.34 +1.6
2,935,920 + AO356_12895 0.34 +1.5
2,935,920 + AO356_12895 0.34 +1.0
2,935,920 + AO356_12895 0.34 +1.7
2,935,920 + AO356_12895 0.34 +1.1
2,935,920 + AO356_12895 0.34 +1.6
2,935,920 + AO356_12895 0.34 +1.9
2,935,920 + AO356_12895 0.34 +1.6
2,935,920 + AO356_12895 0.34 +1.7
2,935,920 + AO356_12895 0.34 +1.8
2,935,920 + AO356_12895 0.34 +1.0
2,935,920 + AO356_12895 0.34 +1.7
2,935,920 + AO356_12895 0.34 +2.1
2,935,920 + AO356_12895 0.34 +1.6
2,935,920 + AO356_12895 0.34 +1.4
2,935,920 + AO356_12895 0.34 +1.6
2,935,920 + AO356_12895 0.34 +1.7
2,935,920 + AO356_12895 0.34 +1.8
2,935,920 + AO356_12895 0.34 +1.6
2,935,920 + AO356_12895 0.34 +2.5
2,935,920 + AO356_12895 0.34 +2.3
2,935,920 + AO356_12895 0.34 +1.6
2,935,920 + AO356_12895 0.34 +1.2
2,935,920 + AO356_12895 0.34 +1.7
2,935,921 - AO356_12895 0.34 +2.2
2,935,921 - AO356_12895 0.34 +1.4
2,935,921 - AO356_12895 0.34 +1.6
2,935,921 - AO356_12895 0.34 +1.3
2,935,921 - AO356_12895 0.34 +1.8
2,935,921 - AO356_12895 0.34 +1.2
2,935,921 - AO356_12895 0.34 +1.1
2,935,921 - AO356_12895 0.34 +1.3
2,935,921 - AO356_12895 0.34 +1.6
2,935,921 - AO356_12895 0.34 +2.2
2,935,921 - AO356_12895 0.34 +1.9
2,935,921 - AO356_12895 0.34 +1.9
2,935,921 - AO356_12895 0.34 +2.0
2,935,993 - AO356_12895 0.37 +1.6
2,935,993 - AO356_12895 0.37 +0.9
2,935,993 - AO356_12895 0.37 +1.4
2,936,148 + AO356_12895 0.44 +2.0
2,936,148 + AO356_12895 0.44 +1.1
2,936,187 + AO356_12895 0.46 +2.7
2,936,187 + AO356_12895 0.46 +2.3
2,936,188 - AO356_12895 0.46 +1.3
2,936,188 - AO356_12895 0.46 +1.3
2,936,188 - AO356_12895 0.46 +1.4
2,936,188 - AO356_12895 0.46 +1.3
2,936,188 - AO356_12895 0.46 +2.7
2,936,188 - AO356_12895 0.46 +2.1
2,936,262 + AO356_12895 0.49 +1.3
2,936,262 + AO356_12895 0.49 +1.7
2,936,262 + AO356_12895 0.49 +1.8
2,936,262 + AO356_12895 0.49 +2.3
2,936,263 - AO356_12895 0.49 +1.7
2,936,263 - AO356_12895 0.49 +1.7
2,936,263 - AO356_12895 0.49 +1.4
2,936,263 - AO356_12895 0.49 +0.9
2,936,439 + AO356_12895 0.57 +1.9
2,936,598 + AO356_12895 0.64 +1.6
2,936,598 + AO356_12895 0.64 +1.8
2,936,598 + AO356_12895 0.64 +2.3
2,936,598 + AO356_12895 0.64 +1.5
2,936,598 + AO356_12895 0.64 +2.0
2,936,598 + AO356_12895 0.64 +2.1
2,936,598 + AO356_12895 0.64 +1.8
2,936,598 + AO356_12895 0.64 +2.0
2,936,598 + AO356_12895 0.64 +2.0
2,936,599 - AO356_12895 0.64 +1.7
2,936,599 - AO356_12895 0.64 +2.1
2,936,599 - AO356_12895 0.64 +1.8
2,936,673 + AO356_12895 0.68 +1.1
2,936,697 + AO356_12895 0.69 +1.3
2,936,697 + AO356_12895 0.69 +1.2
2,936,697 + AO356_12895 0.69 +1.4
2,936,697 + AO356_12895 0.69 +1.7
2,936,698 - AO356_12895 0.69 +1.3
2,936,698 - AO356_12895 0.69 +0.9
2,936,698 - AO356_12895 0.69 +1.8
2,936,698 - AO356_12895 0.69 +1.3
2,936,698 - AO356_12895 0.69 +1.7
2,936,698 - AO356_12895 0.69 +1.5
2,936,698 - AO356_12895 0.69 +1.8
2,936,698 - AO356_12895 0.69 +1.1
2,936,721 + AO356_12895 0.70 +1.3
2,936,721 + AO356_12895 0.70 +1.5
2,936,721 + AO356_12895 0.70 +1.1
2,936,721 + AO356_12895 0.70 +1.7
2,936,730 + AO356_12895 0.70 +1.9
2,936,730 + AO356_12895 0.70 +1.4
2,936,731 - AO356_12895 0.70 +2.4
2,936,731 - AO356_12895 0.70 +1.9
2,936,731 - AO356_12895 0.70 +2.0
2,936,967 + AO356_12895 0.81 +1.2
2,936,967 + AO356_12895 0.81 +1.5
2,936,967 + AO356_12895 0.81 +1.6
2,936,967 + AO356_12895 0.81 +1.8
2,936,967 + AO356_12895 0.81 +1.2
2,936,968 - AO356_12895 0.81 +2.2
2,936,968 - AO356_12895 0.81 +2.4
2,936,968 - AO356_12895 0.81 +1.5
2,936,968 - AO356_12895 0.81 +2.4
2,936,968 - AO356_12895 0.81 +0.9
2,936,968 - AO356_12895 0.81 +1.1
2,936,968 - AO356_12895 0.81 +1.6
2,937,064 + AO356_12895 0.85 +1.5
2,937,064 + AO356_12895 0.85 +1.3
2,937,064 + AO356_12895 0.85 +1.4
2,937,064 + AO356_12895 0.85 +1.9
2,937,064 + AO356_12895 0.85 +1.5
2,937,064 + AO356_12895 0.85 +1.7
2,937,064 + AO356_12895 0.85 +1.5
2,937,064 + AO356_12895 0.85 +1.8
2,937,064 + AO356_12895 0.85 +2.2
2,937,064 + AO356_12895 0.85 +1.8
2,937,064 + AO356_12895 0.85 +1.6
2,937,065 - AO356_12895 0.85 +1.4
2,937,065 - AO356_12895 0.85 +1.7
2,937,065 - AO356_12895 0.85 +0.9
2,937,065 - AO356_12895 0.85 +2.1
2,937,065 - AO356_12895 0.85 +1.2
2,937,065 - AO356_12895 0.85 +1.3
2,937,065 - AO356_12895 0.85 +2.0
2,937,065 - AO356_12895 0.85 +2.0
2,937,108 + AO356_12895 0.87 +1.6
2,937,108 + AO356_12895 0.87 +1.9
2,937,108 + AO356_12895 0.87 +1.7
2,937,109 - AO356_12895 0.87 +1.8
2,937,109 - AO356_12895 0.87 +2.0
2,937,109 - AO356_12895 0.87 +1.3
2,937,109 - AO356_12895 0.87 +2.1
2,937,109 - AO356_12895 0.87 +1.4
2,937,109 - AO356_12895 0.87 +2.5
2,937,109 - AO356_12895 0.87 +1.3
2,937,109 - AO356_12895 0.87 +0.8
2,937,109 - AO356_12895 0.87 +1.6
2,937,109 - AO356_12895 0.87 +1.7
2,937,109 - AO356_12895 0.87 +2.3
2,937,109 - AO356_12895 0.87 +0.3
2,937,249 + +1.9
2,937,249 + +1.5
2,937,249 + +1.1
2,937,280 + +1.8
2,937,280 + +1.9
2,937,281 - +1.6
2,937,281 - +1.5
2,937,281 - +1.2
2,937,297 + +1.6
2,937,297 + +0.8
2,937,298 - +1.5
2,937,298 - +1.9
2,937,298 - +2.3
2,937,298 - +1.3
2,937,391 - +0.8
2,937,391 - +0.3
2,937,462 + -0.2
2,937,463 - +0.1
2,937,463 - +1.3
2,937,463 - -0.9
2,937,670 - AO356_12900 0.13 +0.7
2,937,719 + AO356_12900 0.17 -0.5
2,937,719 + AO356_12900 0.17 -1.5
2,937,720 - AO356_12900 0.17 -0.4
2,937,756 + AO356_12900 0.19 -0.3
2,937,757 - AO356_12900 0.19 -1.2
2,937,817 + AO356_12900 0.23 -1.1
2,937,817 + AO356_12900 0.23 +0.3
2,937,842 - AO356_12900 0.25 -0.5
2,937,997 + AO356_12900 0.35 +0.9
2,938,067 - AO356_12900 0.40 +0.1

Or see this region's nucleotide sequence