Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06850

Experiment: 4C survival; 192 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06840 and AO356_06845 are separated by 122 nucleotidesAO356_06845 and AO356_06850 are separated by 131 nucleotidesAO356_06850 and AO356_06855 are separated by 10 nucleotidesAO356_06855 and AO356_06860 are separated by 10 nucleotides AO356_06840: AO356_06840 - GntR family transcriptional regulator, at 1,510,186 to 1,510,929 _06840 AO356_06845: AO356_06845 - porin, at 1,511,052 to 1,511,774 _06845 AO356_06850: AO356_06850 - peptide ABC transporter ATP-binding protein, at 1,511,906 to 1,512,673 _06850 AO356_06855: AO356_06855 - peptide ABC transporter ATP-binding protein, at 1,512,684 to 1,513,523 _06855 AO356_06860: AO356_06860 - D-ala-D-ala transporter subunit, at 1,513,534 to 1,514,442 _06860 Position (kb) 1511 1512 1513Strain fitness (log2 ratio) -2 -1 0 1 2at 1510.919 kb on - strandat 1510.919 kb on - strandat 1510.927 kb on + strandat 1511.065 kb on + strandat 1511.065 kb on + strandat 1511.065 kb on + strandat 1511.065 kb on + strandat 1511.066 kb on - strandat 1511.066 kb on - strandat 1511.066 kb on - strandat 1511.066 kb on - strandat 1511.066 kb on - strandat 1511.123 kb on + strandat 1511.123 kb on + strandat 1511.167 kb on + strand, within AO356_06845at 1511.167 kb on + strand, within AO356_06845at 1511.168 kb on - strand, within AO356_06845at 1511.191 kb on + strand, within AO356_06845at 1511.192 kb on - strand, within AO356_06845at 1511.210 kb on + strand, within AO356_06845at 1511.221 kb on + strand, within AO356_06845at 1511.221 kb on + strand, within AO356_06845at 1511.221 kb on + strand, within AO356_06845at 1511.222 kb on - strand, within AO356_06845at 1511.222 kb on - strand, within AO356_06845at 1511.222 kb on - strand, within AO356_06845at 1511.236 kb on + strand, within AO356_06845at 1511.237 kb on - strand, within AO356_06845at 1511.237 kb on - strand, within AO356_06845at 1511.249 kb on - strand, within AO356_06845at 1511.254 kb on + strand, within AO356_06845at 1511.254 kb on + strand, within AO356_06845at 1511.254 kb on + strand, within AO356_06845at 1511.254 kb on + strand, within AO356_06845at 1511.254 kb on + strand, within AO356_06845at 1511.254 kb on + strand, within AO356_06845at 1511.255 kb on - strand, within AO356_06845at 1511.278 kb on + strand, within AO356_06845at 1511.287 kb on + strand, within AO356_06845at 1511.287 kb on + strand, within AO356_06845at 1511.288 kb on - strand, within AO356_06845at 1511.288 kb on - strand, within AO356_06845at 1511.288 kb on - strand, within AO356_06845at 1511.378 kb on - strand, within AO356_06845at 1511.443 kb on + strand, within AO356_06845at 1511.443 kb on + strand, within AO356_06845at 1511.443 kb on + strand, within AO356_06845at 1511.443 kb on + strand, within AO356_06845at 1511.444 kb on - strand, within AO356_06845at 1511.519 kb on - strand, within AO356_06845at 1511.593 kb on + strand, within AO356_06845at 1511.594 kb on - strand, within AO356_06845at 1511.594 kb on - strand, within AO356_06845at 1511.681 kb on - strand, within AO356_06845at 1511.691 kb on + strand, within AO356_06845at 1511.691 kb on + strand, within AO356_06845at 1511.692 kb on - strand, within AO356_06845at 1511.692 kb on - strand, within AO356_06845at 1511.692 kb on - strand, within AO356_06845at 1511.692 kb on - strand, within AO356_06845at 1511.699 kb on + strand, within AO356_06845at 1511.700 kb on - strand, within AO356_06845at 1511.700 kb on - strand, within AO356_06845at 1511.701 kb on + strand, within AO356_06845at 1511.702 kb on - strandat 1511.702 kb on - strandat 1511.782 kb on + strandat 1511.791 kb on + strandat 1511.791 kb on + strandat 1511.792 kb on - strandat 1511.792 kb on - strandat 1511.792 kb on - strandat 1511.800 kb on + strandat 1511.801 kb on - strandat 1511.803 kb on + strandat 1511.803 kb on + strandat 1511.803 kb on + strandat 1511.803 kb on + strandat 1511.803 kb on + strandat 1511.803 kb on + strandat 1511.803 kb on + strandat 1511.804 kb on - strandat 1511.804 kb on - strandat 1511.804 kb on - strandat 1511.917 kb on + strandat 1511.918 kb on - strandat 1511.918 kb on - strandat 1511.921 kb on + strandat 1511.922 kb on - strandat 1511.930 kb on + strandat 1511.930 kb on + strandat 1511.930 kb on + strandat 1511.931 kb on - strandat 1511.931 kb on - strandat 1511.931 kb on - strandat 1511.931 kb on - strandat 1511.931 kb on - strandat 1511.964 kb on + strandat 1511.965 kb on - strandat 1511.965 kb on - strandat 1512.093 kb on + strand, within AO356_06850at 1512.093 kb on + strand, within AO356_06850at 1512.402 kb on + strand, within AO356_06850at 1512.402 kb on + strand, within AO356_06850at 1512.402 kb on + strand, within AO356_06850at 1512.505 kb on - strand, within AO356_06850at 1512.505 kb on - strand, within AO356_06850at 1512.778 kb on + strand, within AO356_06855at 1512.779 kb on - strand, within AO356_06855at 1512.839 kb on - strand, within AO356_06855at 1512.839 kb on - strand, within AO356_06855at 1512.839 kb on - strand, within AO356_06855at 1513.081 kb on + strand, within AO356_06855at 1513.174 kb on + strand, within AO356_06855at 1513.222 kb on + strand, within AO356_06855at 1513.222 kb on + strand, within AO356_06855at 1513.222 kb on + strand, within AO356_06855at 1513.359 kb on + strand, within AO356_06855at 1513.359 kb on + strand, within AO356_06855at 1513.360 kb on - strand, within AO356_06855at 1513.512 kb on + strandat 1513.513 kb on - strandat 1513.655 kb on + strand, within AO356_06860at 1513.655 kb on + strand, within AO356_06860at 1513.655 kb on + strand, within AO356_06860

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 192 hrs
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1,510,919 - -0.2
1,510,919 - +1.2
1,510,927 + -1.2
1,511,065 + +0.8
1,511,065 + -0.3
1,511,065 + +2.3
1,511,065 + +0.7
1,511,066 - -0.1
1,511,066 - -0.9
1,511,066 - +0.6
1,511,066 - +0.3
1,511,066 - +1.5
1,511,123 + -1.1
1,511,123 + -0.2
1,511,167 + AO356_06845 0.16 -0.2
1,511,167 + AO356_06845 0.16 +0.1
1,511,168 - AO356_06845 0.16 +0.2
1,511,191 + AO356_06845 0.19 +0.7
1,511,192 - AO356_06845 0.19 -0.0
1,511,210 + AO356_06845 0.22 +0.5
1,511,221 + AO356_06845 0.23 +0.2
1,511,221 + AO356_06845 0.23 -0.3
1,511,221 + AO356_06845 0.23 +0.5
1,511,222 - AO356_06845 0.24 +0.2
1,511,222 - AO356_06845 0.24 +0.3
1,511,222 - AO356_06845 0.24 +0.4
1,511,236 + AO356_06845 0.25 +0.6
1,511,237 - AO356_06845 0.26 +1.6
1,511,237 - AO356_06845 0.26 -0.0
1,511,249 - AO356_06845 0.27 +0.7
1,511,254 + AO356_06845 0.28 -0.5
1,511,254 + AO356_06845 0.28 -1.3
1,511,254 + AO356_06845 0.28 +0.6
1,511,254 + AO356_06845 0.28 -0.8
1,511,254 + AO356_06845 0.28 +0.2
1,511,254 + AO356_06845 0.28 -0.7
1,511,255 - AO356_06845 0.28 -0.6
1,511,278 + AO356_06845 0.31 -2.5
1,511,287 + AO356_06845 0.33 +0.1
1,511,287 + AO356_06845 0.33 +0.3
1,511,288 - AO356_06845 0.33 -0.1
1,511,288 - AO356_06845 0.33 -0.1
1,511,288 - AO356_06845 0.33 -0.8
1,511,378 - AO356_06845 0.45 -0.6
1,511,443 + AO356_06845 0.54 -0.5
1,511,443 + AO356_06845 0.54 +0.2
1,511,443 + AO356_06845 0.54 +0.8
1,511,443 + AO356_06845 0.54 +0.3
1,511,444 - AO356_06845 0.54 +0.1
1,511,519 - AO356_06845 0.65 -0.0
1,511,593 + AO356_06845 0.75 +0.1
1,511,594 - AO356_06845 0.75 -0.5
1,511,594 - AO356_06845 0.75 -1.9
1,511,681 - AO356_06845 0.87 -0.5
1,511,691 + AO356_06845 0.88 +0.3
1,511,691 + AO356_06845 0.88 -0.1
1,511,692 - AO356_06845 0.89 +0.5
1,511,692 - AO356_06845 0.89 -0.0
1,511,692 - AO356_06845 0.89 +0.7
1,511,692 - AO356_06845 0.89 +0.9
1,511,699 + AO356_06845 0.89 +1.1
1,511,700 - AO356_06845 0.90 +0.5
1,511,700 - AO356_06845 0.90 +0.5
1,511,701 + AO356_06845 0.90 -0.5
1,511,702 - -0.1
1,511,702 - -0.6
1,511,782 + +1.5
1,511,791 + -0.1
1,511,791 + -0.2
1,511,792 - -0.6
1,511,792 - +0.2
1,511,792 - +0.8
1,511,800 + +0.2
1,511,801 - +0.1
1,511,803 + +1.6
1,511,803 + +0.1
1,511,803 + +0.2
1,511,803 + -0.5
1,511,803 + -0.9
1,511,803 + +0.4
1,511,803 + +0.3
1,511,804 - -0.3
1,511,804 - +0.1
1,511,804 - -0.2
1,511,917 + -0.9
1,511,918 - -0.2
1,511,918 - -0.4
1,511,921 + -0.6
1,511,922 - -0.4
1,511,930 + +0.8
1,511,930 + -0.1
1,511,930 + +0.1
1,511,931 - -0.3
1,511,931 - +0.0
1,511,931 - -1.4
1,511,931 - +0.3
1,511,931 - -0.7
1,511,964 + -0.6
1,511,965 - +0.2
1,511,965 - -0.8
1,512,093 + AO356_06850 0.24 -0.2
1,512,093 + AO356_06850 0.24 +0.5
1,512,402 + AO356_06850 0.65 +0.4
1,512,402 + AO356_06850 0.65 -0.8
1,512,402 + AO356_06850 0.65 +0.1
1,512,505 - AO356_06850 0.78 -0.5
1,512,505 - AO356_06850 0.78 +0.2
1,512,778 + AO356_06855 0.11 +0.2
1,512,779 - AO356_06855 0.11 +1.2
1,512,839 - AO356_06855 0.18 +0.1
1,512,839 - AO356_06855 0.18 +0.2
1,512,839 - AO356_06855 0.18 +0.8
1,513,081 + AO356_06855 0.47 -0.3
1,513,174 + AO356_06855 0.58 +0.1
1,513,222 + AO356_06855 0.64 -1.3
1,513,222 + AO356_06855 0.64 -0.5
1,513,222 + AO356_06855 0.64 +0.5
1,513,359 + AO356_06855 0.80 +0.1
1,513,359 + AO356_06855 0.80 -0.1
1,513,360 - AO356_06855 0.80 -1.3
1,513,512 + -1.4
1,513,513 - +0.3
1,513,655 + AO356_06860 0.13 +0.9
1,513,655 + AO356_06860 0.13 +0.6
1,513,655 + AO356_06860 0.13 +0.2

Or see this region's nucleotide sequence