Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06790

Experiment: 4C survival; 192 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06785 and AO356_06790 overlap by 17 nucleotidesAO356_06790 and AO356_06795 are separated by 1 nucleotides AO356_06785: AO356_06785 - diguanylate cyclase, at 1,496,621 to 1,497,706 _06785 AO356_06790: AO356_06790 - TonB-dependent receptor, at 1,497,690 to 1,500,041 _06790 AO356_06795: AO356_06795 - histidine kinase, at 1,500,043 to 1,502,430 _06795 Position (kb) 1497 1498 1499 1500 1501Strain fitness (log2 ratio) -1 0 1 2at 1496.803 kb on - strand, within AO356_06785at 1496.931 kb on + strand, within AO356_06785at 1496.932 kb on - strand, within AO356_06785at 1496.932 kb on - strand, within AO356_06785at 1497.049 kb on + strand, within AO356_06785at 1497.049 kb on + strand, within AO356_06785at 1497.049 kb on + strand, within AO356_06785at 1497.050 kb on - strand, within AO356_06785at 1497.050 kb on - strand, within AO356_06785at 1497.050 kb on - strand, within AO356_06785at 1497.122 kb on + strand, within AO356_06785at 1497.122 kb on + strand, within AO356_06785at 1497.122 kb on + strand, within AO356_06785at 1497.123 kb on - strand, within AO356_06785at 1497.123 kb on - strand, within AO356_06785at 1497.123 kb on - strand, within AO356_06785at 1497.123 kb on - strand, within AO356_06785at 1497.123 kb on - strand, within AO356_06785at 1497.123 kb on - strand, within AO356_06785at 1497.123 kb on - strand, within AO356_06785at 1497.123 kb on - strand, within AO356_06785at 1497.172 kb on - strand, within AO356_06785at 1497.332 kb on + strand, within AO356_06785at 1497.332 kb on + strand, within AO356_06785at 1497.332 kb on + strand, within AO356_06785at 1497.333 kb on - strand, within AO356_06785at 1497.333 kb on - strand, within AO356_06785at 1497.333 kb on - strand, within AO356_06785at 1497.333 kb on - strand, within AO356_06785at 1497.333 kb on - strand, within AO356_06785at 1497.333 kb on - strand, within AO356_06785at 1497.333 kb on - strand, within AO356_06785at 1497.406 kb on + strand, within AO356_06785at 1497.406 kb on + strand, within AO356_06785at 1497.407 kb on - strand, within AO356_06785at 1497.629 kb on + strandat 1497.629 kb on + strandat 1497.630 kb on - strandat 1497.630 kb on - strandat 1497.630 kb on - strandat 1497.630 kb on - strandat 1497.695 kb on - strandat 1497.748 kb on + strandat 1497.749 kb on - strandat 1497.772 kb on + strandat 1497.772 kb on + strandat 1497.772 kb on + strandat 1497.773 kb on - strandat 1497.787 kb on + strandat 1497.787 kb on + strandat 1497.788 kb on - strandat 1497.788 kb on - strandat 1497.788 kb on - strandat 1497.788 kb on - strandat 1497.889 kb on + strandat 1497.889 kb on + strandat 1497.889 kb on + strandat 1497.889 kb on + strandat 1497.890 kb on - strandat 1497.890 kb on - strandat 1497.890 kb on - strandat 1497.890 kb on - strandat 1497.890 kb on - strandat 1497.923 kb on - strandat 1497.940 kb on + strand, within AO356_06790at 1497.955 kb on + strand, within AO356_06790at 1497.970 kb on + strand, within AO356_06790at 1497.971 kb on - strand, within AO356_06790at 1498.027 kb on + strand, within AO356_06790at 1498.028 kb on - strand, within AO356_06790at 1498.255 kb on + strand, within AO356_06790at 1498.255 kb on + strand, within AO356_06790at 1498.255 kb on + strand, within AO356_06790at 1498.255 kb on + strand, within AO356_06790at 1498.255 kb on + strand, within AO356_06790at 1498.255 kb on + strand, within AO356_06790at 1498.255 kb on + strand, within AO356_06790at 1498.256 kb on - strand, within AO356_06790at 1498.256 kb on - strand, within AO356_06790at 1498.256 kb on - strand, within AO356_06790at 1498.270 kb on + strand, within AO356_06790at 1498.271 kb on - strand, within AO356_06790at 1498.292 kb on - strand, within AO356_06790at 1498.429 kb on + strand, within AO356_06790at 1498.450 kb on + strand, within AO356_06790at 1498.450 kb on + strand, within AO356_06790at 1498.451 kb on - strand, within AO356_06790at 1498.451 kb on - strand, within AO356_06790at 1498.516 kb on - strand, within AO356_06790at 1498.534 kb on + strand, within AO356_06790at 1498.534 kb on + strand, within AO356_06790at 1498.534 kb on + strand, within AO356_06790at 1498.534 kb on + strand, within AO356_06790at 1498.534 kb on + strand, within AO356_06790at 1498.535 kb on - strand, within AO356_06790at 1498.535 kb on - strand, within AO356_06790at 1498.753 kb on + strand, within AO356_06790at 1498.754 kb on - strand, within AO356_06790at 1498.820 kb on - strand, within AO356_06790at 1498.918 kb on + strand, within AO356_06790at 1498.919 kb on - strand, within AO356_06790at 1498.919 kb on - strand, within AO356_06790at 1498.919 kb on - strand, within AO356_06790at 1498.919 kb on - strand, within AO356_06790at 1498.921 kb on + strand, within AO356_06790at 1498.922 kb on - strand, within AO356_06790at 1498.936 kb on + strand, within AO356_06790at 1498.937 kb on - strand, within AO356_06790at 1498.937 kb on - strand, within AO356_06790at 1498.937 kb on - strand, within AO356_06790at 1499.174 kb on + strand, within AO356_06790at 1499.191 kb on + strand, within AO356_06790at 1499.192 kb on - strand, within AO356_06790at 1499.192 kb on - strand, within AO356_06790at 1499.299 kb on + strand, within AO356_06790at 1499.299 kb on + strand, within AO356_06790at 1499.300 kb on - strand, within AO356_06790at 1499.494 kb on + strand, within AO356_06790at 1499.495 kb on - strand, within AO356_06790at 1499.609 kb on + strand, within AO356_06790at 1499.609 kb on + strand, within AO356_06790at 1499.610 kb on - strand, within AO356_06790at 1499.610 kb on - strand, within AO356_06790at 1499.701 kb on + strand, within AO356_06790at 1499.701 kb on + strand, within AO356_06790at 1499.701 kb on + strand, within AO356_06790at 1499.702 kb on - strand, within AO356_06790at 1500.044 kb on + strandat 1500.044 kb on + strandat 1500.045 kb on - strandat 1500.045 kb on - strandat 1500.045 kb on - strandat 1500.045 kb on - strandat 1500.201 kb on - strandat 1500.947 kb on + strand, within AO356_06795at 1500.947 kb on + strand, within AO356_06795at 1500.948 kb on - strand, within AO356_06795at 1500.953 kb on + strand, within AO356_06795

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 192 hrs
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1,496,803 - AO356_06785 0.17 +0.5
1,496,931 + AO356_06785 0.29 -0.3
1,496,932 - AO356_06785 0.29 +1.4
1,496,932 - AO356_06785 0.29 -0.3
1,497,049 + AO356_06785 0.39 -0.6
1,497,049 + AO356_06785 0.39 +1.7
1,497,049 + AO356_06785 0.39 +0.6
1,497,050 - AO356_06785 0.40 +1.1
1,497,050 - AO356_06785 0.40 -0.1
1,497,050 - AO356_06785 0.40 -1.6
1,497,122 + AO356_06785 0.46 +1.0
1,497,122 + AO356_06785 0.46 +1.2
1,497,122 + AO356_06785 0.46 +1.0
1,497,123 - AO356_06785 0.46 -0.3
1,497,123 - AO356_06785 0.46 +1.0
1,497,123 - AO356_06785 0.46 +0.4
1,497,123 - AO356_06785 0.46 +0.5
1,497,123 - AO356_06785 0.46 +0.5
1,497,123 - AO356_06785 0.46 +1.0
1,497,123 - AO356_06785 0.46 -0.2
1,497,123 - AO356_06785 0.46 -0.2
1,497,172 - AO356_06785 0.51 +1.2
1,497,332 + AO356_06785 0.65 +0.5
1,497,332 + AO356_06785 0.65 +1.1
1,497,332 + AO356_06785 0.65 +1.3
1,497,333 - AO356_06785 0.66 -0.9
1,497,333 - AO356_06785 0.66 -0.2
1,497,333 - AO356_06785 0.66 +0.2
1,497,333 - AO356_06785 0.66 +0.1
1,497,333 - AO356_06785 0.66 +0.0
1,497,333 - AO356_06785 0.66 +0.9
1,497,333 - AO356_06785 0.66 +0.1
1,497,406 + AO356_06785 0.72 +0.2
1,497,406 + AO356_06785 0.72 +0.2
1,497,407 - AO356_06785 0.72 +0.1
1,497,629 + +1.0
1,497,629 + -0.4
1,497,630 - +0.0
1,497,630 - -0.0
1,497,630 - +1.6
1,497,630 - -0.4
1,497,695 - -1.6
1,497,748 + +0.5
1,497,749 - -0.1
1,497,772 + -1.5
1,497,772 + +0.2
1,497,772 + +0.3
1,497,773 - -0.5
1,497,787 + +0.4
1,497,787 + +0.1
1,497,788 - -0.7
1,497,788 - +1.5
1,497,788 - -1.3
1,497,788 - +0.3
1,497,889 + +0.5
1,497,889 + -0.4
1,497,889 + +0.2
1,497,889 + -0.3
1,497,890 - +0.1
1,497,890 - +0.5
1,497,890 - -0.7
1,497,890 - -0.2
1,497,890 - +0.4
1,497,923 - +0.6
1,497,940 + AO356_06790 0.11 -0.0
1,497,955 + AO356_06790 0.11 +0.6
1,497,970 + AO356_06790 0.12 -1.2
1,497,971 - AO356_06790 0.12 -0.2
1,498,027 + AO356_06790 0.14 +0.2
1,498,028 - AO356_06790 0.14 +0.6
1,498,255 + AO356_06790 0.24 +0.7
1,498,255 + AO356_06790 0.24 +0.5
1,498,255 + AO356_06790 0.24 +0.6
1,498,255 + AO356_06790 0.24 +0.8
1,498,255 + AO356_06790 0.24 +0.7
1,498,255 + AO356_06790 0.24 +0.3
1,498,255 + AO356_06790 0.24 -0.2
1,498,256 - AO356_06790 0.24 -1.3
1,498,256 - AO356_06790 0.24 +0.4
1,498,256 - AO356_06790 0.24 +1.2
1,498,270 + AO356_06790 0.25 -1.1
1,498,271 - AO356_06790 0.25 +0.4
1,498,292 - AO356_06790 0.26 +0.7
1,498,429 + AO356_06790 0.31 -0.1
1,498,450 + AO356_06790 0.32 -0.6
1,498,450 + AO356_06790 0.32 +0.1
1,498,451 - AO356_06790 0.32 +0.7
1,498,451 - AO356_06790 0.32 -0.2
1,498,516 - AO356_06790 0.35 -0.5
1,498,534 + AO356_06790 0.36 -1.1
1,498,534 + AO356_06790 0.36 -0.1
1,498,534 + AO356_06790 0.36 +0.6
1,498,534 + AO356_06790 0.36 -0.2
1,498,534 + AO356_06790 0.36 -0.4
1,498,535 - AO356_06790 0.36 +1.2
1,498,535 - AO356_06790 0.36 -0.4
1,498,753 + AO356_06790 0.45 -0.4
1,498,754 - AO356_06790 0.45 -0.5
1,498,820 - AO356_06790 0.48 +1.1
1,498,918 + AO356_06790 0.52 +0.3
1,498,919 - AO356_06790 0.52 +0.4
1,498,919 - AO356_06790 0.52 +0.1
1,498,919 - AO356_06790 0.52 +1.3
1,498,919 - AO356_06790 0.52 -0.3
1,498,921 + AO356_06790 0.52 -0.4
1,498,922 - AO356_06790 0.52 -0.7
1,498,936 + AO356_06790 0.53 +0.4
1,498,937 - AO356_06790 0.53 +1.8
1,498,937 - AO356_06790 0.53 +1.3
1,498,937 - AO356_06790 0.53 -0.1
1,499,174 + AO356_06790 0.63 -0.7
1,499,191 + AO356_06790 0.64 -1.7
1,499,192 - AO356_06790 0.64 +0.3
1,499,192 - AO356_06790 0.64 -0.7
1,499,299 + AO356_06790 0.68 +0.9
1,499,299 + AO356_06790 0.68 +0.5
1,499,300 - AO356_06790 0.68 +0.3
1,499,494 + AO356_06790 0.77 +0.1
1,499,495 - AO356_06790 0.77 +0.4
1,499,609 + AO356_06790 0.82 +0.3
1,499,609 + AO356_06790 0.82 -0.1
1,499,610 - AO356_06790 0.82 +0.4
1,499,610 - AO356_06790 0.82 -0.2
1,499,701 + AO356_06790 0.86 +0.0
1,499,701 + AO356_06790 0.86 -0.5
1,499,701 + AO356_06790 0.86 +0.5
1,499,702 - AO356_06790 0.86 +1.5
1,500,044 + -0.9
1,500,044 + -0.3
1,500,045 - +0.3
1,500,045 - +1.0
1,500,045 - +0.6
1,500,045 - +0.5
1,500,201 - +0.7
1,500,947 + AO356_06795 0.38 +0.8
1,500,947 + AO356_06795 0.38 -0.2
1,500,948 - AO356_06795 0.38 -0.2
1,500,953 + AO356_06795 0.38 +0.4

Or see this region's nucleotide sequence