Experiment: 4C survival; 192 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_06115 and AO356_06120 are separated by 94 nucleotides AO356_06120 and AO356_06125 are separated by 33 nucleotides AO356_06125 and AO356_06130 are separated by 136 nucleotides
AO356_06115: AO356_06115 - hypothetical protein, at 1,356,989 to 1,357,360
_06115
AO356_06120: AO356_06120 - hypothetical protein, at 1,357,455 to 1,357,850
_06120
AO356_06125: AO356_06125 - hypothetical protein, at 1,357,884 to 1,358,573
_06125
AO356_06130: AO356_06130 - multidrug transporter AcrB, at 1,358,710 to 1,361,775
_06130
Position (kb)
1357
1358
1359 Strain fitness (log2 ratio)
-2
-1
0
1 at 1356.918 kb on + strand at 1356.919 kb on - strand at 1356.919 kb on - strand at 1356.943 kb on + strand at 1356.944 kb on - strand at 1356.944 kb on - strand at 1356.970 kb on + strand at 1356.970 kb on + strand at 1356.970 kb on + strand at 1356.971 kb on - strand at 1356.971 kb on - strand at 1357.029 kb on - strand, within AO356_06115 at 1357.195 kb on + strand, within AO356_06115 at 1357.220 kb on + strand, within AO356_06115 at 1357.221 kb on - strand, within AO356_06115 at 1357.221 kb on - strand, within AO356_06115 at 1357.400 kb on + strand at 1357.548 kb on + strand, within AO356_06120 at 1357.549 kb on - strand, within AO356_06120 at 1357.549 kb on - strand, within AO356_06120 at 1357.549 kb on - strand, within AO356_06120 at 1357.549 kb on - strand, within AO356_06120 at 1357.549 kb on - strand, within AO356_06120 at 1357.580 kb on + strand, within AO356_06120 at 1357.580 kb on + strand, within AO356_06120 at 1357.580 kb on + strand, within AO356_06120 at 1357.581 kb on - strand, within AO356_06120 at 1357.692 kb on + strand, within AO356_06120 at 1357.692 kb on + strand, within AO356_06120 at 1357.693 kb on - strand, within AO356_06120 at 1357.693 kb on - strand, within AO356_06120 at 1357.693 kb on - strand, within AO356_06120 at 1357.693 kb on - strand, within AO356_06120 at 1357.693 kb on - strand, within AO356_06120 at 1357.725 kb on + strand, within AO356_06120 at 1357.895 kb on + strand at 1358.292 kb on + strand, within AO356_06125 at 1358.292 kb on + strand, within AO356_06125 at 1358.292 kb on + strand, within AO356_06125 at 1358.292 kb on + strand, within AO356_06125 at 1358.383 kb on - strand, within AO356_06125 at 1358.383 kb on - strand, within AO356_06125 at 1358.383 kb on - strand, within AO356_06125 at 1358.383 kb on - strand, within AO356_06125 at 1358.451 kb on + strand, within AO356_06125 at 1358.451 kb on + strand, within AO356_06125 at 1358.451 kb on + strand, within AO356_06125 at 1358.452 kb on - strand, within AO356_06125 at 1358.452 kb on - strand, within AO356_06125 at 1358.452 kb on - strand, within AO356_06125 at 1358.452 kb on - strand, within AO356_06125 at 1358.452 kb on - strand, within AO356_06125 at 1358.741 kb on + strand at 1358.741 kb on + strand at 1358.741 kb on + strand at 1358.742 kb on - strand at 1358.742 kb on - strand at 1358.742 kb on - strand at 1358.742 kb on - strand at 1358.742 kb on - strand at 1358.742 kb on - strand at 1358.979 kb on + strand at 1358.980 kb on - strand at 1358.980 kb on - strand at 1358.980 kb on - strand at 1358.980 kb on - strand at 1359.237 kb on - strand, within AO356_06130 at 1359.318 kb on - strand, within AO356_06130 at 1359.318 kb on - strand, within AO356_06130 at 1359.321 kb on + strand, within AO356_06130 at 1359.322 kb on - strand, within AO356_06130 at 1359.322 kb on - strand, within AO356_06130 at 1359.322 kb on - strand, within AO356_06130 at 1359.322 kb on - strand, within AO356_06130 at 1359.322 kb on - strand, within AO356_06130 at 1359.387 kb on - strand, within AO356_06130 at 1359.387 kb on - strand, within AO356_06130 at 1359.487 kb on - strand, within AO356_06130
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 192 hrs remove 1,356,918 + +0.4 1,356,919 - -0.2 1,356,919 - +1.0 1,356,943 + -0.5 1,356,944 - +0.5 1,356,944 - +0.3 1,356,970 + +0.2 1,356,970 + -0.5 1,356,970 + -0.0 1,356,971 - -0.9 1,356,971 - -0.0 1,357,029 - AO356_06115 0.11 -0.0 1,357,195 + AO356_06115 0.55 +0.2 1,357,220 + AO356_06115 0.62 -0.4 1,357,221 - AO356_06115 0.62 +0.0 1,357,221 - AO356_06115 0.62 +0.0 1,357,400 + +0.1 1,357,548 + AO356_06120 0.23 +0.2 1,357,549 - AO356_06120 0.24 +0.0 1,357,549 - AO356_06120 0.24 +0.7 1,357,549 - AO356_06120 0.24 -0.2 1,357,549 - AO356_06120 0.24 +0.3 1,357,549 - AO356_06120 0.24 -2.7 1,357,580 + AO356_06120 0.32 -0.6 1,357,580 + AO356_06120 0.32 +0.8 1,357,580 + AO356_06120 0.32 +0.0 1,357,581 - AO356_06120 0.32 +0.5 1,357,692 + AO356_06120 0.60 -0.0 1,357,692 + AO356_06120 0.60 -0.7 1,357,693 - AO356_06120 0.60 +0.2 1,357,693 - AO356_06120 0.60 +0.0 1,357,693 - AO356_06120 0.60 +0.3 1,357,693 - AO356_06120 0.60 +0.8 1,357,693 - AO356_06120 0.60 +1.0 1,357,725 + AO356_06120 0.68 -0.2 1,357,895 + -0.2 1,358,292 + AO356_06125 0.59 -1.7 1,358,292 + AO356_06125 0.59 +0.1 1,358,292 + AO356_06125 0.59 +1.1 1,358,292 + AO356_06125 0.59 -1.2 1,358,383 - AO356_06125 0.72 +0.3 1,358,383 - AO356_06125 0.72 +0.0 1,358,383 - AO356_06125 0.72 +0.4 1,358,383 - AO356_06125 0.72 -0.5 1,358,451 + AO356_06125 0.82 +0.1 1,358,451 + AO356_06125 0.82 -0.1 1,358,451 + AO356_06125 0.82 +0.5 1,358,452 - AO356_06125 0.82 -1.2 1,358,452 - AO356_06125 0.82 +0.9 1,358,452 - AO356_06125 0.82 +0.9 1,358,452 - AO356_06125 0.82 -0.4 1,358,452 - AO356_06125 0.82 +0.9 1,358,741 + +0.3 1,358,741 + -1.3 1,358,741 + +0.2 1,358,742 - +0.3 1,358,742 - +0.4 1,358,742 - +0.8 1,358,742 - +0.0 1,358,742 - +0.1 1,358,742 - -0.1 1,358,979 + +0.4 1,358,980 - -0.1 1,358,980 - +0.9 1,358,980 - -0.1 1,358,980 - +1.6 1,359,237 - AO356_06130 0.17 +0.8 1,359,318 - AO356_06130 0.20 -1.3 1,359,318 - AO356_06130 0.20 -0.4 1,359,321 + AO356_06130 0.20 +0.1 1,359,322 - AO356_06130 0.20 +0.6 1,359,322 - AO356_06130 0.20 -0.2 1,359,322 - AO356_06130 0.20 +0.1 1,359,322 - AO356_06130 0.20 +0.2 1,359,322 - AO356_06130 0.20 +0.3 1,359,387 - AO356_06130 0.22 -0.3 1,359,387 - AO356_06130 0.22 -0.4 1,359,487 - AO356_06130 0.25 +0.0
Or see this region's nucleotide sequence