Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03885

Experiment: 4C survival; 192 hrs

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_03880 and AO356_03885 are separated by 274 nucleotidesAO356_03885 and AO356_03890 are separated by 330 nucleotides AO356_03880: AO356_03880 - flagellin, at 857,838 to 858,686 _03880 AO356_03885: AO356_03885 - beta-ketoacyl-ACP synthase, at 858,961 to 859,887 _03885 AO356_03890: AO356_03890 - glycosyl transferase family 2, at 860,218 to 863,112 _03890 Position (kb) 858 859 860Strain fitness (log2 ratio) -2 -1 0 1at 857.964 kb on + strand, within AO356_03880at 857.965 kb on - strand, within AO356_03880at 858.128 kb on + strand, within AO356_03880at 858.128 kb on + strand, within AO356_03880at 858.129 kb on - strand, within AO356_03880at 858.359 kb on + strand, within AO356_03880at 858.413 kb on + strand, within AO356_03880at 858.413 kb on + strand, within AO356_03880at 858.413 kb on + strand, within AO356_03880at 858.413 kb on + strand, within AO356_03880at 858.413 kb on + strand, within AO356_03880at 858.414 kb on - strand, within AO356_03880at 858.414 kb on - strand, within AO356_03880at 858.414 kb on - strand, within AO356_03880at 858.414 kb on - strand, within AO356_03880at 858.414 kb on - strand, within AO356_03880at 858.474 kb on - strand, within AO356_03880at 858.665 kb on + strandat 858.665 kb on + strandat 858.665 kb on + strandat 858.665 kb on + strandat 858.672 kb on + strandat 858.672 kb on + strandat 858.678 kb on + strandat 858.749 kb on - strandat 858.761 kb on + strandat 858.761 kb on + strandat 858.762 kb on - strandat 858.762 kb on - strandat 858.764 kb on + strandat 858.764 kb on + strandat 858.764 kb on + strandat 858.764 kb on + strandat 858.764 kb on + strandat 858.764 kb on + strandat 858.764 kb on + strandat 858.765 kb on - strandat 858.765 kb on - strandat 858.765 kb on - strandat 858.765 kb on - strandat 858.765 kb on - strandat 858.768 kb on + strandat 858.768 kb on + strandat 858.768 kb on + strandat 858.768 kb on + strandat 858.768 kb on + strandat 858.769 kb on - strandat 859.086 kb on + strand, within AO356_03885at 859.087 kb on - strand, within AO356_03885at 859.250 kb on - strand, within AO356_03885at 859.523 kb on + strand, within AO356_03885at 859.524 kb on - strand, within AO356_03885at 859.524 kb on - strand, within AO356_03885at 859.524 kb on - strand, within AO356_03885at 859.524 kb on - strand, within AO356_03885at 859.524 kb on - strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.535 kb on - strand, within AO356_03885at 859.535 kb on - strand, within AO356_03885at 859.535 kb on - strand, within AO356_03885at 859.535 kb on - strand, within AO356_03885at 859.535 kb on - strand, within AO356_03885at 859.535 kb on - strand, within AO356_03885at 859.538 kb on + strand, within AO356_03885at 859.538 kb on + strand, within AO356_03885at 859.539 kb on - strand, within AO356_03885at 859.539 kb on - strand, within AO356_03885at 859.539 kb on - strand, within AO356_03885at 859.558 kb on + strand, within AO356_03885at 859.558 kb on + strand, within AO356_03885at 859.559 kb on - strand, within AO356_03885at 859.559 kb on - strand, within AO356_03885at 859.559 kb on - strand, within AO356_03885at 859.559 kb on - strand, within AO356_03885at 859.560 kb on + strand, within AO356_03885at 859.560 kb on + strand, within AO356_03885at 859.832 kb on + strandat 859.832 kb on + strandat 859.832 kb on + strandat 859.833 kb on - strandat 859.833 kb on - strandat 859.833 kb on - strandat 859.833 kb on - strandat 859.836 kb on + strandat 859.859 kb on + strandat 859.859 kb on + strandat 859.859 kb on + strandat 859.859 kb on + strandat 859.859 kb on + strandat 859.859 kb on + strandat 859.860 kb on - strandat 859.860 kb on - strandat 859.860 kb on - strandat 859.860 kb on - strandat 859.860 kb on - strandat 859.877 kb on - strandat 859.915 kb on + strandat 859.916 kb on - strandat 859.916 kb on - strandat 859.916 kb on - strandat 860.013 kb on + strandat 860.013 kb on + strandat 860.014 kb on - strandat 860.018 kb on + strandat 860.018 kb on + strandat 860.019 kb on - strandat 860.019 kb on - strandat 860.036 kb on + strandat 860.037 kb on - strandat 860.043 kb on + strandat 860.043 kb on + strandat 860.043 kb on + strandat 860.043 kb on + strandat 860.043 kb on + strandat 860.043 kb on + strandat 860.043 kb on + strandat 860.043 kb on + strandat 860.044 kb on - strandat 860.044 kb on - strandat 860.091 kb on + strandat 860.092 kb on - strandat 860.116 kb on + strandat 860.180 kb on + strandat 860.181 kb on - strandat 860.220 kb on - strandat 860.242 kb on + strandat 860.300 kb on + strandat 860.300 kb on + strandat 860.300 kb on + strandat 860.300 kb on + strandat 860.300 kb on + strandat 860.301 kb on - strandat 860.301 kb on - strandat 860.421 kb on - strandat 860.488 kb on + strandat 860.488 kb on + strandat 860.488 kb on + strandat 860.488 kb on + strandat 860.489 kb on - strandat 860.489 kb on - strandat 860.489 kb on - strandat 860.489 kb on - strandat 860.582 kb on + strand, within AO356_03890at 860.582 kb on + strand, within AO356_03890at 860.583 kb on - strand, within AO356_03890at 860.664 kb on + strand, within AO356_03890at 860.664 kb on + strand, within AO356_03890at 860.664 kb on + strand, within AO356_03890at 860.665 kb on - strand, within AO356_03890at 860.665 kb on - strand, within AO356_03890at 860.665 kb on - strand, within AO356_03890at 860.665 kb on - strand, within AO356_03890at 860.665 kb on - strand, within AO356_03890at 860.665 kb on - strand, within AO356_03890at 860.790 kb on - strand, within AO356_03890at 860.790 kb on - strand, within AO356_03890

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 192 hrs
remove
857,964 + AO356_03880 0.15 +0.1
857,965 - AO356_03880 0.15 -1.3
858,128 + AO356_03880 0.34 +0.2
858,128 + AO356_03880 0.34 -0.4
858,129 - AO356_03880 0.34 -1.6
858,359 + AO356_03880 0.61 -1.0
858,413 + AO356_03880 0.68 +1.1
858,413 + AO356_03880 0.68 -1.7
858,413 + AO356_03880 0.68 -0.4
858,413 + AO356_03880 0.68 -0.6
858,413 + AO356_03880 0.68 -0.0
858,414 - AO356_03880 0.68 +0.4
858,414 - AO356_03880 0.68 -0.5
858,414 - AO356_03880 0.68 +0.2
858,414 - AO356_03880 0.68 +0.1
858,414 - AO356_03880 0.68 -2.4
858,474 - AO356_03880 0.75 +0.0
858,665 + -1.6
858,665 + -1.3
858,665 + -1.3
858,665 + -0.4
858,672 + -0.6
858,672 + -1.0
858,678 + -0.1
858,749 - -1.5
858,761 + -1.7
858,761 + +0.5
858,762 - -0.5
858,762 - +0.3
858,764 + -1.1
858,764 + +0.5
858,764 + -1.2
858,764 + +0.3
858,764 + -1.7
858,764 + -1.5
858,764 + -0.4
858,765 - +0.2
858,765 - -1.1
858,765 - +0.6
858,765 - +0.4
858,765 - +0.4
858,768 + +0.8
858,768 + -0.4
858,768 + -1.3
858,768 + -0.8
858,768 + +0.6
858,769 - -0.5
859,086 + AO356_03885 0.13 -0.5
859,087 - AO356_03885 0.14 -0.8
859,250 - AO356_03885 0.31 -0.8
859,523 + AO356_03885 0.61 -0.1
859,524 - AO356_03885 0.61 -0.2
859,524 - AO356_03885 0.61 -0.4
859,524 - AO356_03885 0.61 +0.2
859,524 - AO356_03885 0.61 -0.3
859,524 - AO356_03885 0.61 -0.5
859,534 + AO356_03885 0.62 -0.3
859,534 + AO356_03885 0.62 -1.3
859,534 + AO356_03885 0.62 -0.3
859,534 + AO356_03885 0.62 +0.9
859,534 + AO356_03885 0.62 -1.1
859,534 + AO356_03885 0.62 -0.5
859,534 + AO356_03885 0.62 +0.8
859,534 + AO356_03885 0.62 +0.4
859,534 + AO356_03885 0.62 -0.6
859,534 + AO356_03885 0.62 +0.9
859,534 + AO356_03885 0.62 +0.1
859,535 - AO356_03885 0.62 +0.2
859,535 - AO356_03885 0.62 +0.2
859,535 - AO356_03885 0.62 -0.4
859,535 - AO356_03885 0.62 +0.4
859,535 - AO356_03885 0.62 +0.1
859,535 - AO356_03885 0.62 -0.3
859,538 + AO356_03885 0.62 -0.4
859,538 + AO356_03885 0.62 -0.8
859,539 - AO356_03885 0.62 -0.3
859,539 - AO356_03885 0.62 -0.6
859,539 - AO356_03885 0.62 +0.6
859,558 + AO356_03885 0.64 +0.4
859,558 + AO356_03885 0.64 +0.1
859,559 - AO356_03885 0.65 -2.4
859,559 - AO356_03885 0.65 -1.0
859,559 - AO356_03885 0.65 +0.3
859,559 - AO356_03885 0.65 -2.0
859,560 + AO356_03885 0.65 +0.7
859,560 + AO356_03885 0.65 +0.5
859,832 + +0.2
859,832 + -0.3
859,832 + +0.6
859,833 - -0.8
859,833 - -0.5
859,833 - -0.4
859,833 - +0.1
859,836 + +0.9
859,859 + +0.4
859,859 + +0.0
859,859 + -0.6
859,859 + -0.4
859,859 + -0.0
859,859 + -0.1
859,860 - +0.5
859,860 - -0.6
859,860 - -0.3
859,860 - -0.9
859,860 - +0.4
859,877 - -0.6
859,915 + -0.9
859,916 - -0.5
859,916 - +1.2
859,916 - +1.0
860,013 + -0.5
860,013 + -0.5
860,014 - +0.4
860,018 + -2.2
860,018 + -1.3
860,019 - -1.4
860,019 - -1.3
860,036 + -1.3
860,037 - +0.2
860,043 + +0.3
860,043 + -2.0
860,043 + -0.5
860,043 + +0.2
860,043 + -1.8
860,043 + -0.1
860,043 + -0.9
860,043 + +0.6
860,044 - -0.8
860,044 - -0.8
860,091 + -0.4
860,092 - -0.6
860,116 + +0.9
860,180 + +1.0
860,181 - +0.2
860,220 - +0.7
860,242 + -0.0
860,300 + +0.4
860,300 + -1.3
860,300 + -0.0
860,300 + -0.7
860,300 + +0.2
860,301 - -1.0
860,301 - +0.7
860,421 - +0.3
860,488 + -0.4
860,488 + +1.4
860,488 + -0.2
860,488 + -1.2
860,489 - +0.6
860,489 - +0.7
860,489 - +0.1
860,489 - -0.8
860,582 + AO356_03890 0.13 +0.2
860,582 + AO356_03890 0.13 -0.4
860,583 - AO356_03890 0.13 +0.8
860,664 + AO356_03890 0.15 -0.7
860,664 + AO356_03890 0.15 -0.3
860,664 + AO356_03890 0.15 +0.4
860,665 - AO356_03890 0.15 +0.0
860,665 - AO356_03890 0.15 +0.0
860,665 - AO356_03890 0.15 +0.1
860,665 - AO356_03890 0.15 +0.9
860,665 - AO356_03890 0.15 +0.9
860,665 - AO356_03890 0.15 +0.0
860,790 - AO356_03890 0.20 -0.5
860,790 - AO356_03890 0.20 +0.4

Or see this region's nucleotide sequence