Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03880

Experiment: 4C survival; 192 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03870 and AO356_03875 are separated by 82 nucleotidesAO356_03875 and AO356_03880 are separated by 72 nucleotidesAO356_03880 and AO356_03885 are separated by 274 nucleotides AO356_03870: AO356_03870 - flagellar hook protein FliD, at 855,887 to 857,317 _03870 AO356_03875: AO356_03875 - flagellar biosynthesis protein FlaG, at 857,400 to 857,765 _03875 AO356_03880: AO356_03880 - flagellin, at 857,838 to 858,686 _03880 AO356_03885: AO356_03885 - beta-ketoacyl-ACP synthase, at 858,961 to 859,887 _03885 Position (kb) 857 858 859Strain fitness (log2 ratio) -2 -1 0 1 2at 856.883 kb on + strand, within AO356_03870at 856.884 kb on - strand, within AO356_03870at 856.884 kb on - strand, within AO356_03870at 856.884 kb on - strand, within AO356_03870at 856.897 kb on - strand, within AO356_03870at 856.897 kb on - strand, within AO356_03870at 856.927 kb on + strand, within AO356_03870at 856.927 kb on + strand, within AO356_03870at 856.948 kb on + strand, within AO356_03870at 856.949 kb on - strand, within AO356_03870at 856.949 kb on - strand, within AO356_03870at 857.016 kb on + strand, within AO356_03870at 857.016 kb on + strand, within AO356_03870at 857.016 kb on + strand, within AO356_03870at 857.016 kb on + strand, within AO356_03870at 857.016 kb on + strand, within AO356_03870at 857.016 kb on + strand, within AO356_03870at 857.016 kb on + strand, within AO356_03870at 857.016 kb on + strand, within AO356_03870at 857.016 kb on + strand, within AO356_03870at 857.017 kb on - strand, within AO356_03870at 857.017 kb on - strand, within AO356_03870at 857.017 kb on - strand, within AO356_03870at 857.017 kb on - strand, within AO356_03870at 857.017 kb on - strand, within AO356_03870at 857.017 kb on - strand, within AO356_03870at 857.017 kb on - strand, within AO356_03870at 857.017 kb on - strand, within AO356_03870at 857.017 kb on - strand, within AO356_03870at 857.020 kb on + strand, within AO356_03870at 857.021 kb on - strand, within AO356_03870at 857.039 kb on - strand, within AO356_03870at 857.179 kb on + strandat 857.179 kb on + strandat 857.179 kb on + strandat 857.179 kb on + strandat 857.179 kb on + strandat 857.179 kb on + strandat 857.180 kb on - strandat 857.180 kb on - strandat 857.180 kb on - strandat 857.180 kb on - strandat 857.180 kb on - strandat 857.285 kb on + strandat 857.300 kb on + strandat 857.300 kb on + strandat 857.357 kb on + strandat 857.357 kb on + strandat 857.357 kb on + strandat 857.357 kb on + strandat 857.358 kb on - strandat 857.376 kb on + strandat 857.376 kb on + strandat 857.377 kb on - strandat 857.377 kb on - strandat 857.377 kb on - strandat 857.377 kb on - strandat 857.523 kb on + strand, within AO356_03875at 857.523 kb on + strand, within AO356_03875at 857.523 kb on + strand, within AO356_03875at 857.524 kb on - strand, within AO356_03875at 857.546 kb on + strand, within AO356_03875at 857.640 kb on - strand, within AO356_03875at 857.711 kb on + strand, within AO356_03875at 857.711 kb on + strand, within AO356_03875at 857.711 kb on + strand, within AO356_03875at 857.711 kb on + strand, within AO356_03875at 857.712 kb on - strand, within AO356_03875at 857.712 kb on - strand, within AO356_03875at 857.712 kb on - strand, within AO356_03875at 857.712 kb on - strand, within AO356_03875at 857.712 kb on - strand, within AO356_03875at 857.759 kb on + strandat 857.836 kb on + strandat 857.836 kb on + strandat 857.837 kb on - strandat 857.837 kb on - strandat 857.837 kb on - strandat 857.837 kb on - strandat 857.839 kb on + strandat 857.840 kb on - strandat 857.856 kb on + strandat 857.857 kb on - strandat 857.897 kb on + strandat 857.897 kb on + strandat 857.958 kb on - strand, within AO356_03880at 857.964 kb on + strand, within AO356_03880at 857.965 kb on - strand, within AO356_03880at 858.128 kb on + strand, within AO356_03880at 858.128 kb on + strand, within AO356_03880at 858.129 kb on - strand, within AO356_03880at 858.359 kb on + strand, within AO356_03880at 858.413 kb on + strand, within AO356_03880at 858.413 kb on + strand, within AO356_03880at 858.413 kb on + strand, within AO356_03880at 858.413 kb on + strand, within AO356_03880at 858.413 kb on + strand, within AO356_03880at 858.414 kb on - strand, within AO356_03880at 858.414 kb on - strand, within AO356_03880at 858.414 kb on - strand, within AO356_03880at 858.414 kb on - strand, within AO356_03880at 858.414 kb on - strand, within AO356_03880at 858.474 kb on - strand, within AO356_03880at 858.665 kb on + strandat 858.665 kb on + strandat 858.665 kb on + strandat 858.665 kb on + strandat 858.672 kb on + strandat 858.672 kb on + strandat 858.678 kb on + strandat 858.749 kb on - strandat 858.761 kb on + strandat 858.761 kb on + strandat 858.762 kb on - strandat 858.762 kb on - strandat 858.764 kb on + strandat 858.764 kb on + strandat 858.764 kb on + strandat 858.764 kb on + strandat 858.764 kb on + strandat 858.764 kb on + strandat 858.764 kb on + strandat 858.765 kb on - strandat 858.765 kb on - strandat 858.765 kb on - strandat 858.765 kb on - strandat 858.765 kb on - strandat 858.768 kb on + strandat 858.768 kb on + strandat 858.768 kb on + strandat 858.768 kb on + strandat 858.768 kb on + strandat 858.769 kb on - strandat 859.086 kb on + strand, within AO356_03885at 859.087 kb on - strand, within AO356_03885at 859.250 kb on - strand, within AO356_03885at 859.523 kb on + strand, within AO356_03885at 859.524 kb on - strand, within AO356_03885at 859.524 kb on - strand, within AO356_03885at 859.524 kb on - strand, within AO356_03885at 859.524 kb on - strand, within AO356_03885at 859.524 kb on - strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.534 kb on + strand, within AO356_03885at 859.535 kb on - strand, within AO356_03885at 859.535 kb on - strand, within AO356_03885at 859.535 kb on - strand, within AO356_03885at 859.535 kb on - strand, within AO356_03885at 859.535 kb on - strand, within AO356_03885at 859.535 kb on - strand, within AO356_03885at 859.538 kb on + strand, within AO356_03885at 859.538 kb on + strand, within AO356_03885at 859.539 kb on - strand, within AO356_03885at 859.539 kb on - strand, within AO356_03885at 859.539 kb on - strand, within AO356_03885at 859.558 kb on + strand, within AO356_03885at 859.558 kb on + strand, within AO356_03885at 859.559 kb on - strand, within AO356_03885at 859.559 kb on - strand, within AO356_03885at 859.559 kb on - strand, within AO356_03885at 859.559 kb on - strand, within AO356_03885at 859.560 kb on + strand, within AO356_03885at 859.560 kb on + strand, within AO356_03885

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 192 hrs
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856,883 + AO356_03870 0.70 -1.1
856,884 - AO356_03870 0.70 -2.1
856,884 - AO356_03870 0.70 +0.2
856,884 - AO356_03870 0.70 -1.9
856,897 - AO356_03870 0.71 -1.0
856,897 - AO356_03870 0.71 -1.4
856,927 + AO356_03870 0.73 -1.5
856,927 + AO356_03870 0.73 -0.5
856,948 + AO356_03870 0.74 -2.0
856,949 - AO356_03870 0.74 -0.1
856,949 - AO356_03870 0.74 +0.4
857,016 + AO356_03870 0.79 +0.0
857,016 + AO356_03870 0.79 +0.9
857,016 + AO356_03870 0.79 -0.6
857,016 + AO356_03870 0.79 -1.6
857,016 + AO356_03870 0.79 -1.5
857,016 + AO356_03870 0.79 -0.6
857,016 + AO356_03870 0.79 +0.1
857,016 + AO356_03870 0.79 -0.5
857,016 + AO356_03870 0.79 +0.2
857,017 - AO356_03870 0.79 -0.7
857,017 - AO356_03870 0.79 -0.9
857,017 - AO356_03870 0.79 -0.6
857,017 - AO356_03870 0.79 +0.7
857,017 - AO356_03870 0.79 -0.1
857,017 - AO356_03870 0.79 -0.9
857,017 - AO356_03870 0.79 -0.3
857,017 - AO356_03870 0.79 -0.9
857,017 - AO356_03870 0.79 +0.2
857,020 + AO356_03870 0.79 -0.5
857,021 - AO356_03870 0.79 -0.7
857,039 - AO356_03870 0.81 -0.9
857,179 + -0.2
857,179 + -0.1
857,179 + +0.2
857,179 + +0.7
857,179 + -0.7
857,179 + -0.0
857,180 - -0.7
857,180 - +1.9
857,180 - -0.6
857,180 - +0.2
857,180 - -0.8
857,285 + +0.2
857,300 + -1.0
857,300 + -2.0
857,357 + -1.0
857,357 + -1.0
857,357 + +0.0
857,357 + -1.7
857,358 - -0.2
857,376 + -0.7
857,376 + +0.3
857,377 - -1.6
857,377 - +0.4
857,377 - +0.2
857,377 - +0.1
857,523 + AO356_03875 0.34 +0.6
857,523 + AO356_03875 0.34 -1.1
857,523 + AO356_03875 0.34 +0.8
857,524 - AO356_03875 0.34 +0.0
857,546 + AO356_03875 0.40 -1.1
857,640 - AO356_03875 0.66 +0.4
857,711 + AO356_03875 0.85 -1.0
857,711 + AO356_03875 0.85 +0.5
857,711 + AO356_03875 0.85 +0.6
857,711 + AO356_03875 0.85 -0.4
857,712 - AO356_03875 0.85 +0.9
857,712 - AO356_03875 0.85 -0.1
857,712 - AO356_03875 0.85 -1.3
857,712 - AO356_03875 0.85 +0.6
857,712 - AO356_03875 0.85 -0.3
857,759 + -0.3
857,836 + -0.4
857,836 + -0.0
857,837 - -0.5
857,837 - +0.1
857,837 - -0.1
857,837 - -0.5
857,839 + -0.5
857,840 - -0.8
857,856 + -0.9
857,857 - -0.8
857,897 + -0.6
857,897 + -0.4
857,958 - AO356_03880 0.14 -0.4
857,964 + AO356_03880 0.15 +0.1
857,965 - AO356_03880 0.15 -1.3
858,128 + AO356_03880 0.34 +0.2
858,128 + AO356_03880 0.34 -0.4
858,129 - AO356_03880 0.34 -1.6
858,359 + AO356_03880 0.61 -1.0
858,413 + AO356_03880 0.68 +1.1
858,413 + AO356_03880 0.68 -1.7
858,413 + AO356_03880 0.68 -0.4
858,413 + AO356_03880 0.68 -0.6
858,413 + AO356_03880 0.68 -0.0
858,414 - AO356_03880 0.68 +0.4
858,414 - AO356_03880 0.68 -0.5
858,414 - AO356_03880 0.68 +0.2
858,414 - AO356_03880 0.68 +0.1
858,414 - AO356_03880 0.68 -2.4
858,474 - AO356_03880 0.75 +0.0
858,665 + -1.6
858,665 + -1.3
858,665 + -1.3
858,665 + -0.4
858,672 + -0.6
858,672 + -1.0
858,678 + -0.1
858,749 - -1.5
858,761 + -1.7
858,761 + +0.5
858,762 - -0.5
858,762 - +0.3
858,764 + -1.1
858,764 + +0.5
858,764 + -1.2
858,764 + +0.3
858,764 + -1.7
858,764 + -1.5
858,764 + -0.4
858,765 - +0.2
858,765 - -1.1
858,765 - +0.6
858,765 - +0.4
858,765 - +0.4
858,768 + +0.8
858,768 + -0.4
858,768 + -1.3
858,768 + -0.8
858,768 + +0.6
858,769 - -0.5
859,086 + AO356_03885 0.13 -0.5
859,087 - AO356_03885 0.14 -0.8
859,250 - AO356_03885 0.31 -0.8
859,523 + AO356_03885 0.61 -0.1
859,524 - AO356_03885 0.61 -0.2
859,524 - AO356_03885 0.61 -0.4
859,524 - AO356_03885 0.61 +0.2
859,524 - AO356_03885 0.61 -0.3
859,524 - AO356_03885 0.61 -0.5
859,534 + AO356_03885 0.62 -0.3
859,534 + AO356_03885 0.62 -1.3
859,534 + AO356_03885 0.62 -0.3
859,534 + AO356_03885 0.62 +0.9
859,534 + AO356_03885 0.62 -1.1
859,534 + AO356_03885 0.62 -0.5
859,534 + AO356_03885 0.62 +0.8
859,534 + AO356_03885 0.62 +0.4
859,534 + AO356_03885 0.62 -0.6
859,534 + AO356_03885 0.62 +0.9
859,534 + AO356_03885 0.62 +0.1
859,535 - AO356_03885 0.62 +0.2
859,535 - AO356_03885 0.62 +0.2
859,535 - AO356_03885 0.62 -0.4
859,535 - AO356_03885 0.62 +0.4
859,535 - AO356_03885 0.62 +0.1
859,535 - AO356_03885 0.62 -0.3
859,538 + AO356_03885 0.62 -0.4
859,538 + AO356_03885 0.62 -0.8
859,539 - AO356_03885 0.62 -0.3
859,539 - AO356_03885 0.62 -0.6
859,539 - AO356_03885 0.62 +0.6
859,558 + AO356_03885 0.64 +0.4
859,558 + AO356_03885 0.64 +0.1
859,559 - AO356_03885 0.65 -2.4
859,559 - AO356_03885 0.65 -1.0
859,559 - AO356_03885 0.65 +0.3
859,559 - AO356_03885 0.65 -2.0
859,560 + AO356_03885 0.65 +0.7
859,560 + AO356_03885 0.65 +0.5

Or see this region's nucleotide sequence