Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03370

Experiment: 4C survival; 192 hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03365 and AO356_03370 are separated by 7 nucleotidesAO356_03370 and AO356_03375 are separated by 24 nucleotides AO356_03365: AO356_03365 - UDP-N-acetylglucosamine 2-epimerase, at 748,910 to 749,974 _03365 AO356_03370: AO356_03370 - glycosyl transferase, at 749,982 to 751,088 _03370 AO356_03375: AO356_03375 - ExsB family protein, at 751,113 to 752,267 _03375 Position (kb) 749 750 751 752Strain fitness (log2 ratio) -2 -1 0 1at 749.021 kb on + strand, within AO356_03365at 749.305 kb on + strand, within AO356_03365at 749.518 kb on + strand, within AO356_03365at 749.533 kb on + strand, within AO356_03365at 749.599 kb on + strand, within AO356_03365at 749.602 kb on + strand, within AO356_03365at 749.788 kb on + strand, within AO356_03365at 749.792 kb on + strand, within AO356_03365at 749.845 kb on + strand, within AO356_03365at 749.918 kb on + strandat 749.956 kb on + strandat 749.980 kb on + strandat 750.206 kb on + strand, within AO356_03370at 751.315 kb on + strand, within AO356_03375at 751.394 kb on + strand, within AO356_03375at 751.429 kb on + strand, within AO356_03375at 751.538 kb on + strand, within AO356_03375at 751.894 kb on + strand, within AO356_03375

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Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 192 hrs
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749,021 + AO356_03365 0.10 -1.5
749,305 + AO356_03365 0.37 -1.9
749,518 + AO356_03365 0.57 -1.1
749,533 + AO356_03365 0.58 -1.1
749,599 + AO356_03365 0.65 -0.5
749,602 + AO356_03365 0.65 -2.2
749,788 + AO356_03365 0.82 -1.8
749,792 + AO356_03365 0.83 -0.9
749,845 + AO356_03365 0.88 -0.7
749,918 + -0.6
749,956 + -0.5
749,980 + -0.3
750,206 + AO356_03370 0.20 +1.4
751,315 + AO356_03375 0.17 +0.0
751,394 + AO356_03375 0.24 -0.4
751,429 + AO356_03375 0.27 -1.1
751,538 + AO356_03375 0.37 -0.9
751,894 + AO356_03375 0.68 -1.0

Or see this region's nucleotide sequence