Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03255

Experiment: 4C survival; 192 hrs

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_03245 and AO356_03250 are separated by 249 nucleotidesAO356_03250 and AO356_03255 are separated by 100 nucleotidesAO356_03255 and AO356_03260 are separated by 235 nucleotides AO356_03245: AO356_03245 - hypothetical protein, at 720,210 to 720,518 _03245 AO356_03250: AO356_03250 - DoxX family protein, at 720,768 to 721,202 _03250 AO356_03255: AO356_03255 - glycosylase, at 721,303 to 722,724 _03255 AO356_03260: AO356_03260 - hydrolase TatD, at 722,960 to 723,766 _03260 Position (kb) 721 722 723Strain fitness (log2 ratio) -2 -1 0 1 2at 720.410 kb on - strand, within AO356_03245at 720.410 kb on - strand, within AO356_03245at 720.495 kb on + strandat 720.495 kb on + strandat 720.495 kb on + strandat 720.495 kb on + strandat 720.496 kb on - strandat 720.496 kb on - strandat 720.496 kb on - strandat 720.496 kb on - strandat 720.496 kb on - strandat 720.496 kb on - strandat 720.496 kb on - strandat 720.616 kb on - strandat 720.652 kb on + strandat 720.652 kb on + strandat 720.652 kb on + strandat 720.653 kb on - strandat 720.653 kb on - strandat 720.653 kb on - strandat 720.660 kb on + strandat 720.660 kb on + strandat 720.684 kb on + strandat 720.685 kb on - strandat 720.723 kb on + strandat 720.736 kb on + strandat 720.736 kb on + strandat 720.736 kb on + strandat 720.737 kb on - strandat 720.737 kb on - strandat 720.827 kb on + strand, within AO356_03250at 720.828 kb on - strand, within AO356_03250at 720.860 kb on - strand, within AO356_03250at 721.021 kb on + strand, within AO356_03250at 721.021 kb on + strand, within AO356_03250at 721.021 kb on + strand, within AO356_03250at 721.022 kb on - strand, within AO356_03250at 721.122 kb on + strand, within AO356_03250at 721.122 kb on + strand, within AO356_03250at 721.123 kb on - strand, within AO356_03250at 721.123 kb on - strand, within AO356_03250at 721.123 kb on - strand, within AO356_03250at 721.123 kb on - strand, within AO356_03250at 721.202 kb on + strandat 721.202 kb on + strandat 721.203 kb on - strandat 721.203 kb on - strandat 721.203 kb on - strandat 721.203 kb on - strandat 721.221 kb on + strandat 721.221 kb on + strandat 721.222 kb on - strandat 721.222 kb on - strandat 721.222 kb on - strandat 721.225 kb on - strandat 721.309 kb on - strandat 721.370 kb on + strandat 721.370 kb on + strandat 721.371 kb on - strandat 721.371 kb on - strandat 721.371 kb on - strandat 721.373 kb on + strandat 721.374 kb on - strandat 721.374 kb on - strandat 721.377 kb on + strandat 721.377 kb on + strandat 721.377 kb on + strandat 721.377 kb on + strandat 721.377 kb on + strandat 721.378 kb on - strandat 721.378 kb on - strandat 721.386 kb on + strandat 721.387 kb on - strandat 721.389 kb on + strandat 721.389 kb on + strandat 721.389 kb on + strandat 721.389 kb on + strandat 721.390 kb on - strandat 721.390 kb on - strandat 721.390 kb on - strandat 721.390 kb on - strandat 721.390 kb on - strandat 721.390 kb on - strandat 721.394 kb on + strandat 721.394 kb on + strandat 721.394 kb on + strandat 721.394 kb on + strandat 721.394 kb on + strandat 721.394 kb on + strandat 721.395 kb on - strandat 721.395 kb on - strandat 721.395 kb on - strandat 721.395 kb on - strandat 721.395 kb on - strandat 721.414 kb on + strandat 721.414 kb on + strandat 721.415 kb on - strandat 721.523 kb on + strand, within AO356_03255at 721.524 kb on - strand, within AO356_03255at 721.524 kb on - strand, within AO356_03255at 721.524 kb on - strand, within AO356_03255at 721.604 kb on + strand, within AO356_03255at 721.604 kb on + strand, within AO356_03255at 721.604 kb on + strand, within AO356_03255at 721.604 kb on + strand, within AO356_03255at 721.621 kb on + strand, within AO356_03255at 721.621 kb on + strand, within AO356_03255at 721.622 kb on - strand, within AO356_03255at 721.622 kb on - strand, within AO356_03255at 721.865 kb on + strand, within AO356_03255at 721.865 kb on + strand, within AO356_03255at 721.866 kb on - strand, within AO356_03255at 721.877 kb on + strand, within AO356_03255at 721.877 kb on + strand, within AO356_03255at 721.919 kb on + strand, within AO356_03255at 721.919 kb on + strand, within AO356_03255at 721.919 kb on + strand, within AO356_03255at 721.919 kb on + strand, within AO356_03255at 721.919 kb on + strand, within AO356_03255at 721.919 kb on + strand, within AO356_03255at 721.919 kb on + strand, within AO356_03255at 721.919 kb on + strand, within AO356_03255at 721.920 kb on - strand, within AO356_03255at 721.920 kb on - strand, within AO356_03255at 721.920 kb on - strand, within AO356_03255at 721.920 kb on - strand, within AO356_03255at 721.983 kb on - strand, within AO356_03255at 722.008 kb on + strand, within AO356_03255at 722.008 kb on + strand, within AO356_03255at 722.008 kb on + strand, within AO356_03255at 722.009 kb on - strand, within AO356_03255at 722.133 kb on + strand, within AO356_03255at 722.134 kb on - strand, within AO356_03255at 722.270 kb on + strand, within AO356_03255at 722.317 kb on - strand, within AO356_03255at 722.451 kb on + strand, within AO356_03255at 722.452 kb on - strand, within AO356_03255at 722.452 kb on - strand, within AO356_03255at 722.452 kb on - strand, within AO356_03255at 722.486 kb on + strand, within AO356_03255at 722.486 kb on + strand, within AO356_03255at 722.486 kb on + strand, within AO356_03255at 722.487 kb on - strand, within AO356_03255at 722.487 kb on - strand, within AO356_03255at 722.487 kb on - strand, within AO356_03255at 722.701 kb on + strandat 722.701 kb on + strandat 722.701 kb on + strandat 722.701 kb on + strandat 722.702 kb on - strandat 722.702 kb on - strandat 722.702 kb on - strandat 722.707 kb on + strandat 722.707 kb on + strandat 722.707 kb on + strandat 722.707 kb on + strandat 722.707 kb on + strandat 722.707 kb on + strandat 722.707 kb on + strandat 722.708 kb on - strandat 722.708 kb on - strandat 722.708 kb on - strandat 722.708 kb on - strandat 722.708 kb on - strandat 722.708 kb on - strandat 722.840 kb on + strandat 722.842 kb on + strandat 722.842 kb on + strandat 722.843 kb on - strandat 722.851 kb on + strandat 722.851 kb on + strandat 722.852 kb on - strandat 722.852 kb on - strandat 722.852 kb on - strandat 722.852 kb on - strandat 722.852 kb on - strandat 722.891 kb on + strandat 722.892 kb on - strandat 722.927 kb on + strandat 722.953 kb on + strandat 722.954 kb on - strandat 723.038 kb on + strandat 723.038 kb on + strandat 723.038 kb on + strandat 723.039 kb on - strandat 723.342 kb on + strand, within AO356_03260at 723.467 kb on + strand, within AO356_03260at 723.487 kb on + strand, within AO356_03260at 723.487 kb on + strand, within AO356_03260at 723.487 kb on + strand, within AO356_03260at 723.488 kb on - strand, within AO356_03260at 723.488 kb on - strand, within AO356_03260at 723.493 kb on + strand, within AO356_03260at 723.494 kb on - strand, within AO356_03260at 723.494 kb on - strand, within AO356_03260at 723.494 kb on - strand, within AO356_03260at 723.494 kb on - strand, within AO356_03260at 723.555 kb on + strand, within AO356_03260at 723.594 kb on - strand, within AO356_03260at 723.607 kb on + strand, within AO356_03260at 723.650 kb on + strand, within AO356_03260at 723.651 kb on - strand, within AO356_03260

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4C survival; 192 hrs
remove
720,410 - AO356_03245 0.65 -0.5
720,410 - AO356_03245 0.65 -1.0
720,495 + -0.1
720,495 + -0.4
720,495 + +0.5
720,495 + +0.1
720,496 - -0.8
720,496 - -0.4
720,496 - -0.5
720,496 - +0.3
720,496 - +0.2
720,496 - -1.1
720,496 - -0.0
720,616 - +0.1
720,652 + -1.0
720,652 + -0.4
720,652 + +0.2
720,653 - +0.1
720,653 - -1.1
720,653 - -0.8
720,660 + +0.0
720,660 + -0.2
720,684 + +0.3
720,685 - +2.2
720,723 + +0.6
720,736 + +1.4
720,736 + -1.7
720,736 + +0.4
720,737 - -0.4
720,737 - +0.1
720,827 + AO356_03250 0.14 +0.5
720,828 - AO356_03250 0.14 -0.1
720,860 - AO356_03250 0.21 +0.6
721,021 + AO356_03250 0.58 -0.3
721,021 + AO356_03250 0.58 -0.1
721,021 + AO356_03250 0.58 +0.2
721,022 - AO356_03250 0.58 -0.5
721,122 + AO356_03250 0.81 +0.7
721,122 + AO356_03250 0.81 +0.7
721,123 - AO356_03250 0.82 +0.6
721,123 - AO356_03250 0.82 +0.3
721,123 - AO356_03250 0.82 +0.3
721,123 - AO356_03250 0.82 +0.2
721,202 + +0.8
721,202 + +0.5
721,203 - -1.4
721,203 - +0.3
721,203 - +0.3
721,203 - +0.7
721,221 + +0.0
721,221 + +0.2
721,222 - +0.1
721,222 - -0.1
721,222 - +0.1
721,225 - -0.2
721,309 - -1.1
721,370 + -0.0
721,370 + -0.4
721,371 - +0.4
721,371 - +0.2
721,371 - +0.1
721,373 + -0.1
721,374 - -0.7
721,374 - +0.0
721,377 + -0.3
721,377 + -0.1
721,377 + -0.4
721,377 + -0.3
721,377 + +0.1
721,378 - +0.1
721,378 - -0.1
721,386 + +0.1
721,387 - +0.0
721,389 + +0.1
721,389 + -0.6
721,389 + -0.2
721,389 + +0.9
721,390 - -0.8
721,390 - -0.4
721,390 - -0.6
721,390 - -0.2
721,390 - +1.7
721,390 - +0.2
721,394 + +1.2
721,394 + -0.5
721,394 + -0.6
721,394 + +1.2
721,394 + +0.4
721,394 + -1.6
721,395 - -2.3
721,395 - +0.5
721,395 - +1.3
721,395 - -0.3
721,395 - +0.1
721,414 + -0.1
721,414 + +1.7
721,415 - -0.7
721,523 + AO356_03255 0.15 +0.4
721,524 - AO356_03255 0.16 -0.7
721,524 - AO356_03255 0.16 -0.6
721,524 - AO356_03255 0.16 -0.9
721,604 + AO356_03255 0.21 -0.8
721,604 + AO356_03255 0.21 -0.4
721,604 + AO356_03255 0.21 +0.4
721,604 + AO356_03255 0.21 -0.1
721,621 + AO356_03255 0.22 +0.4
721,621 + AO356_03255 0.22 -0.7
721,622 - AO356_03255 0.22 -0.1
721,622 - AO356_03255 0.22 -1.0
721,865 + AO356_03255 0.40 -0.1
721,865 + AO356_03255 0.40 +0.8
721,866 - AO356_03255 0.40 +0.3
721,877 + AO356_03255 0.40 -0.6
721,877 + AO356_03255 0.40 +0.1
721,919 + AO356_03255 0.43 +0.6
721,919 + AO356_03255 0.43 +0.2
721,919 + AO356_03255 0.43 +0.9
721,919 + AO356_03255 0.43 +0.1
721,919 + AO356_03255 0.43 +1.7
721,919 + AO356_03255 0.43 -1.3
721,919 + AO356_03255 0.43 +0.1
721,919 + AO356_03255 0.43 +0.1
721,920 - AO356_03255 0.43 +0.6
721,920 - AO356_03255 0.43 -0.8
721,920 - AO356_03255 0.43 -0.2
721,920 - AO356_03255 0.43 -0.1
721,983 - AO356_03255 0.48 +0.5
722,008 + AO356_03255 0.50 -1.6
722,008 + AO356_03255 0.50 +1.1
722,008 + AO356_03255 0.50 +0.1
722,009 - AO356_03255 0.50 -1.1
722,133 + AO356_03255 0.58 -0.5
722,134 - AO356_03255 0.58 +0.5
722,270 + AO356_03255 0.68 -0.2
722,317 - AO356_03255 0.71 -1.1
722,451 + AO356_03255 0.81 +0.0
722,452 - AO356_03255 0.81 +0.3
722,452 - AO356_03255 0.81 -0.3
722,452 - AO356_03255 0.81 +0.4
722,486 + AO356_03255 0.83 -0.1
722,486 + AO356_03255 0.83 +0.4
722,486 + AO356_03255 0.83 +1.3
722,487 - AO356_03255 0.83 +0.3
722,487 - AO356_03255 0.83 -1.1
722,487 - AO356_03255 0.83 +1.6
722,701 + -0.9
722,701 + -1.2
722,701 + -1.0
722,701 + -0.4
722,702 - -0.4
722,702 - +1.6
722,702 - +0.4
722,707 + -0.6
722,707 + +0.2
722,707 + +1.2
722,707 + +0.3
722,707 + +0.5
722,707 + +0.6
722,707 + +0.9
722,708 - -0.1
722,708 - +0.5
722,708 - +0.5
722,708 - +1.9
722,708 - +0.2
722,708 - -0.3
722,840 + +0.4
722,842 + -0.1
722,842 + +1.2
722,843 - -0.1
722,851 + +0.9
722,851 + -0.9
722,852 - +0.1
722,852 - +1.0
722,852 - -1.0
722,852 - +0.9
722,852 - +1.7
722,891 + +0.1
722,892 - +1.2
722,927 + -1.1
722,953 + +0.0
722,954 - +0.1
723,038 + +0.6
723,038 + -0.1
723,038 + -0.2
723,039 - +0.8
723,342 + AO356_03260 0.47 -0.1
723,467 + AO356_03260 0.63 +0.5
723,487 + AO356_03260 0.65 -0.1
723,487 + AO356_03260 0.65 +0.0
723,487 + AO356_03260 0.65 +0.8
723,488 - AO356_03260 0.65 -0.3
723,488 - AO356_03260 0.65 -0.3
723,493 + AO356_03260 0.66 +0.7
723,494 - AO356_03260 0.66 -1.5
723,494 - AO356_03260 0.66 -0.3
723,494 - AO356_03260 0.66 +0.2
723,494 - AO356_03260 0.66 -0.5
723,555 + AO356_03260 0.74 -0.3
723,594 - AO356_03260 0.79 -0.3
723,607 + AO356_03260 0.80 -0.6
723,650 + AO356_03260 0.86 +0.1
723,651 - AO356_03260 0.86 +0.4

Or see this region's nucleotide sequence