Experiment: 4C survival; 192 hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01720 and AO356_01725 are separated by 344 nucleotides AO356_01725 and AO356_01730 are separated by 102 nucleotides AO356_01730 and AO356_01735 are separated by 47 nucleotides AO356_01735 and AO356_01740 are separated by 149 nucleotides
AO356_01720: AO356_01720 - hypothetical protein, at 388,062 to 388,955
_01720
AO356_01725: AO356_01725 - peptidylprolyl isomerase, at 389,300 to 391,171
_01725
AO356_01730: AO356_01730 - tRNA-Ser, at 391,274 to 391,348
_01730
AO356_01735: AO356_01735 - DNA-binding protein HU, at 391,396 to 391,668
_01735
AO356_01740: AO356_01740 - DNA-binding protein, at 391,818 to 394,214
_01740
Position (kb) 389
390
391
392 Strain fitness (log2 ratio) -2
-1
0
1 at 388.471 kb on + strand, within AO356_01720 at 388.471 kb on + strand, within AO356_01720 at 388.471 kb on + strand, within AO356_01720 at 388.471 kb on + strand, within AO356_01720 at 388.472 kb on - strand, within AO356_01720 at 388.472 kb on - strand, within AO356_01720 at 388.472 kb on - strand, within AO356_01720 at 388.472 kb on - strand, within AO356_01720 at 388.472 kb on - strand, within AO356_01720 at 388.762 kb on + strand, within AO356_01720 at 388.763 kb on - strand, within AO356_01720 at 388.763 kb on - strand, within AO356_01720 at 388.822 kb on + strand, within AO356_01720 at 388.868 kb on - strand at 388.868 kb on - strand at 388.986 kb on + strand at 388.986 kb on + strand at 389.123 kb on + strand at 389.180 kb on + strand at 389.180 kb on + strand at 389.181 kb on - strand at 389.181 kb on - strand at 389.181 kb on - strand at 389.383 kb on - strand at 389.383 kb on - strand at 389.629 kb on + strand, within AO356_01725 at 390.163 kb on - strand, within AO356_01725 at 390.163 kb on - strand, within AO356_01725 at 391.204 kb on - strand at 391.225 kb on - strand at 391.271 kb on - strand at 391.672 kb on - strand at 391.688 kb on - strand at 391.688 kb on - strand at 391.754 kb on - strand at 391.754 kb on - strand at 391.754 kb on - strand at 391.766 kb on - strand at 391.766 kb on - strand at 391.768 kb on - strand at 391.817 kb on - strand at 391.817 kb on - strand at 391.817 kb on - strand at 391.820 kb on - strand at 391.913 kb on - strand at 391.950 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4C survival; 192 hrs remove 388,471 + AO356_01720 0.46 -1.1 388,471 + AO356_01720 0.46 -0.4 388,471 + AO356_01720 0.46 -0.2 388,471 + AO356_01720 0.46 +0.8 388,472 - AO356_01720 0.46 +1.1 388,472 - AO356_01720 0.46 +0.7 388,472 - AO356_01720 0.46 +0.4 388,472 - AO356_01720 0.46 +0.1 388,472 - AO356_01720 0.46 +1.1 388,762 + AO356_01720 0.78 +0.6 388,763 - AO356_01720 0.78 +1.0 388,763 - AO356_01720 0.78 +0.2 388,822 + AO356_01720 0.85 -0.4 388,868 - -0.7 388,868 - -0.4 388,986 + -0.0 388,986 + +0.2 389,123 + +1.2 389,180 + -0.7 389,180 + -0.3 389,181 - -0.1 389,181 - -0.2 389,181 - -0.7 389,383 - -1.1 389,383 - +1.6 389,629 + AO356_01725 0.18 -1.3 390,163 - AO356_01725 0.46 -0.9 390,163 - AO356_01725 0.46 -0.5 391,204 - -0.5 391,225 - -0.6 391,271 - -1.4 391,672 - +0.1 391,688 - -1.7 391,688 - -0.7 391,754 - -0.2 391,754 - +1.0 391,754 - -2.0 391,766 - -0.1 391,766 - -0.9 391,768 - +0.2 391,817 - -0.1 391,817 - -0.0 391,817 - -0.2 391,820 - -1.7 391,913 - -0.8 391,950 - -0.8
Or see this region's nucleotide sequence