Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03915

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03910 and AO353_03915 are separated by 71 nucleotidesAO353_03915 and AO353_03920 are separated by 96 nucleotidesAO353_03920 and AO353_03925 are separated by 5 nucleotides AO353_03910: AO353_03910 - 3-beta hydroxysteroid dehydrogenase, at 836,895 to 837,893 _03910 AO353_03915: AO353_03915 - LysR family transcriptional regulator, at 837,965 to 838,858 _03915 AO353_03920: AO353_03920 - acetyltransferase, at 838,955 to 839,356 _03920 AO353_03925: AO353_03925 - lysine transporter LysE, at 839,362 to 839,964 _03925 Position (kb) 837 838 839Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 836.974 kb on + strandat 836.974 kb on + strandat 836.975 kb on - strandat 836.975 kb on - strandat 836.975 kb on - strandat 836.975 kb on - strandat 836.983 kb on + strandat 836.983 kb on + strandat 836.983 kb on + strandat 836.983 kb on + strandat 836.984 kb on - strandat 836.984 kb on - strandat 836.984 kb on - strandat 836.984 kb on - strandat 837.113 kb on - strand, within AO353_03910at 837.124 kb on + strand, within AO353_03910at 837.124 kb on + strand, within AO353_03910at 837.125 kb on - strand, within AO353_03910at 837.168 kb on + strand, within AO353_03910at 837.168 kb on + strand, within AO353_03910at 837.168 kb on + strand, within AO353_03910at 837.168 kb on + strand, within AO353_03910at 837.168 kb on + strand, within AO353_03910at 837.169 kb on - strand, within AO353_03910at 837.169 kb on - strand, within AO353_03910at 837.169 kb on - strand, within AO353_03910at 837.169 kb on - strand, within AO353_03910at 837.172 kb on + strand, within AO353_03910at 837.172 kb on + strand, within AO353_03910at 837.172 kb on + strand, within AO353_03910at 837.172 kb on + strand, within AO353_03910at 837.172 kb on + strand, within AO353_03910at 837.172 kb on + strand, within AO353_03910at 837.172 kb on + strand, within AO353_03910at 837.172 kb on + strand, within AO353_03910at 837.172 kb on + strand, within AO353_03910at 837.172 kb on + strand, within AO353_03910at 837.172 kb on + strand, within AO353_03910at 837.172 kb on + strand, within AO353_03910at 837.173 kb on - strand, within AO353_03910at 837.173 kb on - strand, within AO353_03910at 837.173 kb on - strand, within AO353_03910at 837.173 kb on - strand, within AO353_03910at 837.173 kb on - strand, within AO353_03910at 837.173 kb on - strand, within AO353_03910at 837.173 kb on - strand, within AO353_03910at 837.173 kb on - strand, within AO353_03910at 837.173 kb on - strand, within AO353_03910at 837.173 kb on - strand, within AO353_03910at 837.173 kb on - strand, within AO353_03910at 837.173 kb on - strand, within AO353_03910at 837.173 kb on - strand, within AO353_03910at 837.173 kb on - strand, within AO353_03910at 837.173 kb on - strand, within AO353_03910at 837.173 kb on - strand, within AO353_03910at 837.220 kb on + strand, within AO353_03910at 837.220 kb on + strand, within AO353_03910at 837.220 kb on + strand, within AO353_03910at 837.220 kb on + strand, within AO353_03910at 837.220 kb on + strand, within AO353_03910at 837.221 kb on - strand, within AO353_03910at 837.221 kb on - strand, within AO353_03910at 837.221 kb on - strand, within AO353_03910at 837.221 kb on - strand, within AO353_03910at 837.221 kb on - strand, within AO353_03910at 837.221 kb on - strand, within AO353_03910at 837.221 kb on - strand, within AO353_03910at 837.221 kb on - strand, within AO353_03910at 837.417 kb on + strand, within AO353_03910at 837.417 kb on + strand, within AO353_03910at 837.417 kb on + strand, within AO353_03910at 837.417 kb on + strand, within AO353_03910at 837.417 kb on + strand, within AO353_03910at 837.417 kb on + strand, within AO353_03910at 837.418 kb on - strand, within AO353_03910at 837.418 kb on - strand, within AO353_03910at 837.466 kb on + strand, within AO353_03910at 837.466 kb on + strand, within AO353_03910at 837.466 kb on + strand, within AO353_03910at 837.466 kb on + strand, within AO353_03910at 837.466 kb on + strand, within AO353_03910at 837.466 kb on + strand, within AO353_03910at 837.467 kb on - strand, within AO353_03910at 837.467 kb on - strand, within AO353_03910at 837.504 kb on + strand, within AO353_03910at 837.547 kb on + strand, within AO353_03910at 837.547 kb on + strand, within AO353_03910at 837.547 kb on + strand, within AO353_03910at 837.548 kb on - strand, within AO353_03910at 837.996 kb on - strandat 838.001 kb on + strandat 838.002 kb on - strandat 838.002 kb on - strandat 838.059 kb on + strand, within AO353_03915at 838.060 kb on - strand, within AO353_03915at 838.060 kb on - strand, within AO353_03915at 838.060 kb on - strand, within AO353_03915at 838.082 kb on - strand, within AO353_03915at 838.499 kb on + strand, within AO353_03915at 838.499 kb on + strand, within AO353_03915at 838.499 kb on + strand, within AO353_03915at 838.499 kb on + strand, within AO353_03915at 838.499 kb on + strand, within AO353_03915at 838.499 kb on + strand, within AO353_03915at 838.499 kb on + strand, within AO353_03915at 838.499 kb on + strand, within AO353_03915at 838.499 kb on + strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strandat 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.500 kb on - strand, within AO353_03915at 838.846 kb on + strandat 838.846 kb on + strandat 838.847 kb on - strandat 839.021 kb on + strand, within AO353_03920at 839.022 kb on - strand, within AO353_03920at 839.022 kb on - strand, within AO353_03920at 839.022 kb on - strand, within AO353_03920at 839.033 kb on - strand, within AO353_03920at 839.153 kb on + strand, within AO353_03920at 839.153 kb on + strand, within AO353_03920at 839.153 kb on + strand, within AO353_03920at 839.154 kb on - strand, within AO353_03920at 839.154 kb on - strand, within AO353_03920at 839.273 kb on + strand, within AO353_03920at 839.274 kb on - strand, within AO353_03920at 839.355 kb on - strandat 839.355 kb on - strandat 839.355 kb on - strandat 839.355 kb on - strandat 839.355 kb on - strandat 839.361 kb on + strandat 839.361 kb on + strandat 839.361 kb on + strandat 839.361 kb on + strandat 839.362 kb on - strandat 839.362 kb on - strandat 839.362 kb on - strandat 839.362 kb on - strandat 839.362 kb on - strandat 839.362 kb on - strandat 839.362 kb on - strandat 839.362 kb on - strandat 839.362 kb on - strandat 839.374 kb on + strandat 839.375 kb on - strandat 839.375 kb on - strandat 839.375 kb on - strandat 839.375 kb on - strandat 839.375 kb on - strandat 839.737 kb on + strand, within AO353_03925at 839.737 kb on + strand, within AO353_03925at 839.737 kb on + strand, within AO353_03925at 839.737 kb on + strand, within AO353_03925at 839.738 kb on - strand, within AO353_03925at 839.738 kb on - strand, within AO353_03925at 839.738 kb on - strand, within AO353_03925at 839.738 kb on - strand, within AO353_03925at 839.738 kb on - strand, within AO353_03925at 839.738 kb on - strand, within AO353_03925at 839.797 kb on + strand, within AO353_03925at 839.797 kb on + strand, within AO353_03925at 839.797 kb on + strand, within AO353_03925at 839.797 kb on + strand, within AO353_03925at 839.797 kb on + strand, within AO353_03925at 839.798 kb on - strand, within AO353_03925at 839.798 kb on - strand, within AO353_03925at 839.798 kb on - strand, within AO353_03925at 839.798 kb on - strand, within AO353_03925at 839.798 kb on - strand, within AO353_03925at 839.798 kb on - strand, within AO353_03925at 839.798 kb on - strand, within AO353_03925at 839.798 kb on - strand, within AO353_03925at 839.801 kb on + strand, within AO353_03925at 839.801 kb on + strand, within AO353_03925at 839.801 kb on + strand, within AO353_03925at 839.801 kb on + strand, within AO353_03925at 839.801 kb on + strand, within AO353_03925at 839.802 kb on - strand, within AO353_03925at 839.802 kb on - strand, within AO353_03925at 839.802 kb on - strand, within AO353_03925

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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836,974 + -0.5
836,974 + +0.6
836,975 - -0.6
836,975 - +0.7
836,975 - -0.5
836,975 - -0.2
836,983 + -0.5
836,983 + +0.3
836,983 + +0.8
836,983 + +1.4
836,984 - +0.2
836,984 - +0.3
836,984 - -0.6
836,984 - +1.0
837,113 - AO353_03910 0.22 -0.4
837,124 + AO353_03910 0.23 +1.0
837,124 + AO353_03910 0.23 +0.6
837,125 - AO353_03910 0.23 +1.3
837,168 + AO353_03910 0.27 -0.9
837,168 + AO353_03910 0.27 -1.4
837,168 + AO353_03910 0.27 -0.5
837,168 + AO353_03910 0.27 +0.3
837,168 + AO353_03910 0.27 -1.3
837,169 - AO353_03910 0.27 -1.0
837,169 - AO353_03910 0.27 +0.3
837,169 - AO353_03910 0.27 +0.1
837,169 - AO353_03910 0.27 -0.0
837,172 + AO353_03910 0.28 -0.1
837,172 + AO353_03910 0.28 -0.6
837,172 + AO353_03910 0.28 -0.9
837,172 + AO353_03910 0.28 -0.2
837,172 + AO353_03910 0.28 +0.2
837,172 + AO353_03910 0.28 -0.0
837,172 + AO353_03910 0.28 +0.2
837,172 + AO353_03910 0.28 -0.2
837,172 + AO353_03910 0.28 -0.2
837,172 + AO353_03910 0.28 -0.7
837,172 + AO353_03910 0.28 -0.0
837,172 + AO353_03910 0.28 +0.6
837,173 - AO353_03910 0.28 -0.1
837,173 - AO353_03910 0.28 +0.2
837,173 - AO353_03910 0.28 -2.3
837,173 - AO353_03910 0.28 -0.2
837,173 - AO353_03910 0.28 +0.3
837,173 - AO353_03910 0.28 -0.0
837,173 - AO353_03910 0.28 +0.0
837,173 - AO353_03910 0.28 +0.0
837,173 - AO353_03910 0.28 +0.4
837,173 - AO353_03910 0.28 +2.4
837,173 - AO353_03910 0.28 -1.0
837,173 - AO353_03910 0.28 -0.6
837,173 - AO353_03910 0.28 -2.4
837,173 - AO353_03910 0.28 +0.4
837,173 - AO353_03910 0.28 +0.0
837,173 - AO353_03910 0.28 -1.0
837,220 + AO353_03910 0.33 -0.7
837,220 + AO353_03910 0.33 -0.4
837,220 + AO353_03910 0.33 +1.8
837,220 + AO353_03910 0.33 +0.8
837,220 + AO353_03910 0.33 -0.3
837,221 - AO353_03910 0.33 +0.8
837,221 - AO353_03910 0.33 +1.2
837,221 - AO353_03910 0.33 -0.1
837,221 - AO353_03910 0.33 -1.6
837,221 - AO353_03910 0.33 +1.8
837,221 - AO353_03910 0.33 -2.6
837,221 - AO353_03910 0.33 -1.4
837,221 - AO353_03910 0.33 +1.5
837,417 + AO353_03910 0.52 -0.4
837,417 + AO353_03910 0.52 +0.7
837,417 + AO353_03910 0.52 +1.4
837,417 + AO353_03910 0.52 +1.2
837,417 + AO353_03910 0.52 +1.1
837,417 + AO353_03910 0.52 -0.6
837,418 - AO353_03910 0.52 -0.2
837,418 - AO353_03910 0.52 -1.0
837,466 + AO353_03910 0.57 +0.0
837,466 + AO353_03910 0.57 -2.0
837,466 + AO353_03910 0.57 -0.6
837,466 + AO353_03910 0.57 -0.7
837,466 + AO353_03910 0.57 +0.6
837,466 + AO353_03910 0.57 +0.3
837,467 - AO353_03910 0.57 +0.4
837,467 - AO353_03910 0.57 -0.5
837,504 + AO353_03910 0.61 +0.1
837,547 + AO353_03910 0.65 -0.2
837,547 + AO353_03910 0.65 -0.0
837,547 + AO353_03910 0.65 -1.2
837,548 - AO353_03910 0.65 +0.9
837,996 - -0.4
838,001 + -1.1
838,002 - +0.1
838,002 - -0.5
838,059 + AO353_03915 0.11 -0.5
838,060 - AO353_03915 0.11 -0.3
838,060 - AO353_03915 0.11 -1.1
838,060 - AO353_03915 0.11 -3.0
838,082 - AO353_03915 0.13 +0.5
838,499 + AO353_03915 0.60 +1.6
838,499 + AO353_03915 0.60 -0.9
838,499 + AO353_03915 0.60 -0.5
838,499 + AO353_03915 0.60 -1.0
838,499 + AO353_03915 0.60 -1.4
838,499 + AO353_03915 0.60 -2.0
838,499 + AO353_03915 0.60 -1.2
838,499 + AO353_03915 0.60 -0.4
838,499 + AO353_03915 0.60 -0.6
838,500 - AO353_03915 0.60 +1.0
838,500 - AO353_03915 0.60 -0.7
838,500 - AO353_03915 0.60 -0.8
838,500 - AO353_03915 0.60 -2.2
838,500 - AO353_03915 0.60 +0.8
838,500 - AO353_03915 0.60 -0.9
838,500 - AO353_03915 0.60 +0.2
838,500 - AO353_03915 0.60 -2.1
838,500 - -0.8
838,500 - AO353_03915 0.60 -2.4
838,500 - AO353_03915 0.60 +0.3
838,500 - AO353_03915 0.60 -0.5
838,500 - AO353_03915 0.60 -1.7
838,500 - AO353_03915 0.60 -0.6
838,500 - AO353_03915 0.60 -1.5
838,500 - AO353_03915 0.60 +0.0
838,500 - AO353_03915 0.60 -0.6
838,846 + +1.4
838,846 + -0.4
838,847 - -0.7
839,021 + AO353_03920 0.16 -1.4
839,022 - AO353_03920 0.17 -0.0
839,022 - AO353_03920 0.17 +0.0
839,022 - AO353_03920 0.17 +0.9
839,033 - AO353_03920 0.19 -0.7
839,153 + AO353_03920 0.49 -0.1
839,153 + AO353_03920 0.49 -0.8
839,153 + AO353_03920 0.49 +0.1
839,154 - AO353_03920 0.50 +0.7
839,154 - AO353_03920 0.50 -1.9
839,273 + AO353_03920 0.79 -0.2
839,274 - AO353_03920 0.79 -1.5
839,355 - +1.2
839,355 - +0.5
839,355 - +0.3
839,355 - -0.6
839,355 - -1.3
839,361 + -1.8
839,361 + -0.1
839,361 + -2.3
839,361 + -1.6
839,362 - +0.1
839,362 - +1.0
839,362 - +0.0
839,362 - -0.2
839,362 - -1.9
839,362 - -0.5
839,362 - -1.0
839,362 - -1.2
839,362 - +1.1
839,374 + -0.8
839,375 - -0.3
839,375 - +0.2
839,375 - -0.4
839,375 - -1.2
839,375 - +2.4
839,737 + AO353_03925 0.62 -0.5
839,737 + AO353_03925 0.62 -1.7
839,737 + AO353_03925 0.62 +1.5
839,737 + AO353_03925 0.62 +0.4
839,738 - AO353_03925 0.62 -0.5
839,738 - AO353_03925 0.62 -1.0
839,738 - AO353_03925 0.62 -0.0
839,738 - AO353_03925 0.62 +1.1
839,738 - AO353_03925 0.62 +0.1
839,738 - AO353_03925 0.62 -1.0
839,797 + AO353_03925 0.72 -1.9
839,797 + AO353_03925 0.72 -1.7
839,797 + AO353_03925 0.72 -1.4
839,797 + AO353_03925 0.72 -1.9
839,797 + AO353_03925 0.72 +1.2
839,798 - AO353_03925 0.72 -0.7
839,798 - AO353_03925 0.72 +1.0
839,798 - AO353_03925 0.72 -0.3
839,798 - AO353_03925 0.72 +0.2
839,798 - AO353_03925 0.72 -1.0
839,798 - AO353_03925 0.72 -0.2
839,798 - AO353_03925 0.72 +1.2
839,798 - AO353_03925 0.72 -1.7
839,801 + AO353_03925 0.73 -1.9
839,801 + AO353_03925 0.73 +0.0
839,801 + AO353_03925 0.73 -1.4
839,801 + AO353_03925 0.73 -1.2
839,801 + AO353_03925 0.73 +2.4
839,802 - AO353_03925 0.73 +1.0
839,802 - AO353_03925 0.73 +0.6
839,802 - AO353_03925 0.73 -0.2

Or see this region's nucleotide sequence