Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21145 and ABZR87_RS21150 are separated by 14 nucleotides ABZR87_RS21150 and ABZR87_RS21155 are separated by 3 nucleotides
ABZR87_RS21145: ABZR87_RS21145 - ABC transporter ATP-binding protein, at 1,128,276 to 1,129,190
_RS21145
ABZR87_RS21150: ABZR87_RS21150 - branched-chain amino acid ABC transporter permease, at 1,129,205 to 1,130,086
_RS21150
ABZR87_RS21155: ABZR87_RS21155 - branched-chain amino acid ABC transporter permease, at 1,130,090 to 1,131,169
_RS21155
Position (kb) 1129
1130
1131 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1128.555 kb on + strand, within ABZR87_RS21145 at 1128.555 kb on + strand, within ABZR87_RS21145 at 1128.802 kb on + strand, within ABZR87_RS21145 at 1128.803 kb on - strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1128.913 kb on + strand, within ABZR87_RS21145 at 1129.143 kb on + strand at 1129.143 kb on + strand at 1129.144 kb on - strand at 1129.144 kb on - strand at 1129.256 kb on + strand at 1129.257 kb on - strand at 1129.289 kb on + strand at 1129.290 kb on - strand at 1129.290 kb on - strand at 1129.512 kb on - strand, within ABZR87_RS21150 at 1129.555 kb on - strand, within ABZR87_RS21150 at 1129.683 kb on - strand, within ABZR87_RS21150 at 1129.683 kb on - strand, within ABZR87_RS21150 at 1129.967 kb on + strand, within ABZR87_RS21150 at 1129.968 kb on - strand, within ABZR87_RS21150 at 1130.012 kb on + strand at 1130.013 kb on - strand at 1130.013 kb on - strand at 1130.013 kb on - strand at 1130.013 kb on - strand at 1130.202 kb on - strand, within ABZR87_RS21155 at 1130.202 kb on - strand, within ABZR87_RS21155 at 1130.232 kb on - strand, within ABZR87_RS21155 at 1130.232 kb on - strand, within ABZR87_RS21155 at 1130.486 kb on + strand, within ABZR87_RS21155 at 1130.486 kb on + strand, within ABZR87_RS21155 at 1130.486 kb on + strand, within ABZR87_RS21155 at 1130.543 kb on + strand, within ABZR87_RS21155 at 1130.544 kb on - strand, within ABZR87_RS21155 at 1130.636 kb on + strand, within ABZR87_RS21155 at 1130.843 kb on + strand, within ABZR87_RS21155 at 1130.843 kb on + strand, within ABZR87_RS21155 at 1130.844 kb on - strand, within ABZR87_RS21155
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 1,128,555 + ABZR87_RS21145 0.30 -1.8 1,128,555 + ABZR87_RS21145 0.30 -1.4 1,128,802 + ABZR87_RS21145 0.57 -0.7 1,128,803 - ABZR87_RS21145 0.58 -0.1 1,128,913 + ABZR87_RS21145 0.70 -0.4 1,128,913 + ABZR87_RS21145 0.70 -0.7 1,128,913 + ABZR87_RS21145 0.70 -1.5 1,128,913 + ABZR87_RS21145 0.70 -1.6 1,129,143 + -0.4 1,129,143 + -1.7 1,129,144 - +0.7 1,129,144 - +0.8 1,129,256 + -1.0 1,129,257 - -2.2 1,129,289 + +0.3 1,129,290 - -1.2 1,129,290 - +0.6 1,129,512 - ABZR87_RS21150 0.35 -0.7 1,129,555 - ABZR87_RS21150 0.40 +1.4 1,129,683 - ABZR87_RS21150 0.54 -0.4 1,129,683 - ABZR87_RS21150 0.54 -1.2 1,129,967 + ABZR87_RS21150 0.86 -0.6 1,129,968 - ABZR87_RS21150 0.87 -3.2 1,130,012 + -1.4 1,130,013 - +2.0 1,130,013 - +0.3 1,130,013 - -2.3 1,130,013 - -0.3 1,130,202 - ABZR87_RS21155 0.10 -0.5 1,130,202 - ABZR87_RS21155 0.10 +0.2 1,130,232 - ABZR87_RS21155 0.13 -1.0 1,130,232 - ABZR87_RS21155 0.13 -1.4 1,130,486 + ABZR87_RS21155 0.37 +1.9 1,130,486 + ABZR87_RS21155 0.37 -2.0 1,130,486 + ABZR87_RS21155 0.37 -1.5 1,130,543 + ABZR87_RS21155 0.42 +1.2 1,130,544 - ABZR87_RS21155 0.42 +0.6 1,130,636 + ABZR87_RS21155 0.51 +2.0 1,130,843 + ABZR87_RS21155 0.70 -0.5 1,130,843 + ABZR87_RS21155 0.70 -3.2 1,130,844 - ABZR87_RS21155 0.70 +1.9
Or see this region's nucleotide sequence