Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20465

Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20460 and ABZR87_RS20465 are separated by 55 nucleotidesABZR87_RS20465 and ABZR87_RS20470 are separated by 56 nucleotides ABZR87_RS20460: ABZR87_RS20460 - putative 2-aminoethylphosphonate ABC transporter substrate-binding protein, at 977,673 to 978,698 _RS20460 ABZR87_RS20465: ABZR87_RS20465 - phosphonoacetaldehyde hydrolase, at 978,754 to 979,632 _RS20465 ABZR87_RS20470: ABZR87_RS20470 - putative 2-aminoethylphosphonate ABC transporter permease subunit, at 979,689 to 981,452 _RS20470 Position (kb) 978 979 980Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 977.848 kb on + strand, within ABZR87_RS20460at 977.848 kb on + strand, within ABZR87_RS20460at 977.916 kb on - strand, within ABZR87_RS20460at 977.976 kb on - strand, within ABZR87_RS20460at 978.089 kb on - strand, within ABZR87_RS20460at 978.089 kb on - strand, within ABZR87_RS20460at 978.121 kb on + strand, within ABZR87_RS20460at 978.121 kb on + strand, within ABZR87_RS20460at 978.121 kb on + strand, within ABZR87_RS20460at 978.121 kb on + strand, within ABZR87_RS20460at 978.175 kb on + strand, within ABZR87_RS20460at 978.358 kb on + strand, within ABZR87_RS20460at 978.358 kb on + strand, within ABZR87_RS20460at 978.571 kb on + strand, within ABZR87_RS20460at 978.572 kb on - strand, within ABZR87_RS20460at 978.572 kb on - strand, within ABZR87_RS20460at 978.605 kb on - strandat 978.605 kb on - strandat 978.842 kb on + strand, within ABZR87_RS20465at 978.843 kb on - strand, within ABZR87_RS20465at 979.027 kb on + strand, within ABZR87_RS20465at 979.027 kb on + strand, within ABZR87_RS20465at 979.028 kb on - strand, within ABZR87_RS20465at 979.203 kb on + strand, within ABZR87_RS20465at 979.203 kb on + strand, within ABZR87_RS20465at 979.203 kb on + strand, within ABZR87_RS20465at 979.313 kb on + strand, within ABZR87_RS20465at 979.313 kb on + strand, within ABZR87_RS20465at 979.313 kb on + strand, within ABZR87_RS20465at 979.313 kb on + strand, within ABZR87_RS20465at 979.313 kb on + strand, within ABZR87_RS20465at 979.313 kb on + strand, within ABZR87_RS20465at 979.313 kb on + strand, within ABZR87_RS20465at 979.314 kb on - strand, within ABZR87_RS20465at 979.314 kb on - strand, within ABZR87_RS20465at 979.668 kb on + strandat 979.739 kb on + strandat 979.739 kb on + strandat 979.762 kb on - strandat 979.874 kb on - strand, within ABZR87_RS20470at 979.874 kb on - strand, within ABZR87_RS20470at 979.921 kb on + strand, within ABZR87_RS20470at 979.921 kb on + strand, within ABZR87_RS20470at 979.921 kb on + strand, within ABZR87_RS20470at 979.921 kb on + strand, within ABZR87_RS20470at 979.922 kb on - strand, within ABZR87_RS20470at 979.922 kb on - strand, within ABZR87_RS20470at 979.975 kb on + strand, within ABZR87_RS20470at 979.976 kb on - strand, within ABZR87_RS20470at 979.976 kb on - strand, within ABZR87_RS20470at 980.120 kb on - strand, within ABZR87_RS20470at 980.164 kb on + strand, within ABZR87_RS20470at 980.165 kb on - strand, within ABZR87_RS20470at 980.289 kb on - strand, within ABZR87_RS20470at 980.386 kb on + strand, within ABZR87_RS20470at 980.386 kb on + strand, within ABZR87_RS20470at 980.386 kb on + strand, within ABZR87_RS20470at 980.386 kb on + strand, within ABZR87_RS20470at 980.386 kb on + strand, within ABZR87_RS20470at 980.387 kb on - strand, within ABZR87_RS20470at 980.387 kb on - strand, within ABZR87_RS20470at 980.387 kb on - strand, within ABZR87_RS20470at 980.387 kb on - strand, within ABZR87_RS20470at 980.387 kb on - strand, within ABZR87_RS20470at 980.413 kb on + strand, within ABZR87_RS20470at 980.414 kb on - strand, within ABZR87_RS20470at 980.443 kb on - strand, within ABZR87_RS20470at 980.536 kb on + strand, within ABZR87_RS20470at 980.536 kb on + strand, within ABZR87_RS20470at 980.536 kb on + strand, within ABZR87_RS20470at 980.536 kb on + strand, within ABZR87_RS20470at 980.537 kb on - strand, within ABZR87_RS20470

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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977,848 + ABZR87_RS20460 0.17 +0.6
977,848 + ABZR87_RS20460 0.17 +0.3
977,916 - ABZR87_RS20460 0.24 +0.1
977,976 - ABZR87_RS20460 0.30 -0.2
978,089 - ABZR87_RS20460 0.41 -0.5
978,089 - ABZR87_RS20460 0.41 -2.1
978,121 + ABZR87_RS20460 0.44 +0.2
978,121 + ABZR87_RS20460 0.44 +0.4
978,121 + ABZR87_RS20460 0.44 +2.1
978,121 + ABZR87_RS20460 0.44 -2.0
978,175 + ABZR87_RS20460 0.49 +1.4
978,358 + ABZR87_RS20460 0.67 -0.2
978,358 + ABZR87_RS20460 0.67 -1.9
978,571 + ABZR87_RS20460 0.88 -0.2
978,572 - ABZR87_RS20460 0.88 -1.2
978,572 - ABZR87_RS20460 0.88 -0.2
978,605 - +0.8
978,605 - +0.4
978,842 + ABZR87_RS20465 0.10 +0.4
978,843 - ABZR87_RS20465 0.10 -2.9
979,027 + ABZR87_RS20465 0.31 +2.3
979,027 + ABZR87_RS20465 0.31 -0.3
979,028 - ABZR87_RS20465 0.31 +0.1
979,203 + ABZR87_RS20465 0.51 +0.1
979,203 + ABZR87_RS20465 0.51 -0.0
979,203 + ABZR87_RS20465 0.51 +3.3
979,313 + ABZR87_RS20465 0.64 -1.1
979,313 + ABZR87_RS20465 0.64 +0.4
979,313 + ABZR87_RS20465 0.64 -0.1
979,313 + ABZR87_RS20465 0.64 +2.5
979,313 + ABZR87_RS20465 0.64 -0.3
979,313 + ABZR87_RS20465 0.64 -0.3
979,313 + ABZR87_RS20465 0.64 +0.3
979,314 - ABZR87_RS20465 0.64 +3.5
979,314 - ABZR87_RS20465 0.64 -0.7
979,668 + -0.3
979,739 + +1.2
979,739 + -1.2
979,762 - +0.7
979,874 - ABZR87_RS20470 0.10 +0.4
979,874 - ABZR87_RS20470 0.10 -0.3
979,921 + ABZR87_RS20470 0.13 -0.4
979,921 + ABZR87_RS20470 0.13 +0.9
979,921 + ABZR87_RS20470 0.13 +0.7
979,921 + ABZR87_RS20470 0.13 +0.2
979,922 - ABZR87_RS20470 0.13 +1.4
979,922 - ABZR87_RS20470 0.13 -0.1
979,975 + ABZR87_RS20470 0.16 -0.2
979,976 - ABZR87_RS20470 0.16 -0.4
979,976 - ABZR87_RS20470 0.16 +0.5
980,120 - ABZR87_RS20470 0.24 +0.5
980,164 + ABZR87_RS20470 0.27 -0.6
980,165 - ABZR87_RS20470 0.27 +0.6
980,289 - ABZR87_RS20470 0.34 -0.6
980,386 + ABZR87_RS20470 0.40 +0.3
980,386 + ABZR87_RS20470 0.40 -1.5
980,386 + ABZR87_RS20470 0.40 -2.2
980,386 + ABZR87_RS20470 0.40 -0.3
980,386 + ABZR87_RS20470 0.40 -0.3
980,387 - ABZR87_RS20470 0.40 -0.9
980,387 - ABZR87_RS20470 0.40 +0.4
980,387 - ABZR87_RS20470 0.40 -0.4
980,387 - ABZR87_RS20470 0.40 +0.2
980,387 - ABZR87_RS20470 0.40 -0.9
980,413 + ABZR87_RS20470 0.41 -0.1
980,414 - ABZR87_RS20470 0.41 -0.5
980,443 - ABZR87_RS20470 0.43 -1.3
980,536 + ABZR87_RS20470 0.48 -1.0
980,536 + ABZR87_RS20470 0.48 -0.0
980,536 + ABZR87_RS20470 0.48 -2.1
980,536 + ABZR87_RS20470 0.48 -1.9
980,537 - ABZR87_RS20470 0.48 +0.9

Or see this region's nucleotide sequence