Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20295 and ABZR87_RS20300 are separated by 255 nucleotides ABZR87_RS20300 and ABZR87_RS20305 are separated by 21 nucleotides
ABZR87_RS20295: ABZR87_RS20295 - MHYT domain-containing protein, at 941,838 to 942,623
_RS20295
ABZR87_RS20300: ABZR87_RS20300 - hypothetical protein, at 942,879 to 943,460
_RS20300
ABZR87_RS20305: ABZR87_RS20305 - MFS transporter, at 943,482 to 944,783
_RS20305
Position (kb) 942
943
944 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 941.986 kb on + strand, within ABZR87_RS20295 at 941.987 kb on - strand, within ABZR87_RS20295 at 941.987 kb on - strand, within ABZR87_RS20295 at 941.987 kb on - strand, within ABZR87_RS20295 at 941.987 kb on - strand, within ABZR87_RS20295 at 941.987 kb on - strand, within ABZR87_RS20295 at 941.987 kb on - strand, within ABZR87_RS20295 at 941.987 kb on - strand, within ABZR87_RS20295 at 942.031 kb on + strand, within ABZR87_RS20295 at 942.032 kb on - strand, within ABZR87_RS20295 at 942.032 kb on - strand, within ABZR87_RS20295 at 942.217 kb on + strand, within ABZR87_RS20295 at 942.217 kb on + strand, within ABZR87_RS20295 at 942.217 kb on + strand, within ABZR87_RS20295 at 942.217 kb on + strand, within ABZR87_RS20295 at 942.218 kb on - strand, within ABZR87_RS20295 at 942.218 kb on - strand, within ABZR87_RS20295 at 942.218 kb on - strand, within ABZR87_RS20295 at 942.391 kb on + strand, within ABZR87_RS20295 at 942.523 kb on + strand, within ABZR87_RS20295 at 942.523 kb on + strand, within ABZR87_RS20295 at 942.524 kb on - strand, within ABZR87_RS20295 at 942.524 kb on - strand, within ABZR87_RS20295 at 942.524 kb on - strand, within ABZR87_RS20295 at 942.547 kb on + strand at 942.548 kb on - strand at 942.574 kb on + strand at 942.575 kb on - strand at 942.575 kb on - strand at 942.575 kb on - strand at 942.575 kb on - strand at 942.575 kb on - strand at 942.575 kb on - strand at 942.575 kb on - strand at 942.580 kb on + strand at 942.581 kb on - strand at 942.616 kb on + strand at 942.639 kb on + strand at 942.640 kb on - strand at 942.640 kb on - strand at 942.642 kb on + strand at 942.764 kb on + strand at 942.764 kb on + strand at 942.764 kb on + strand at 942.764 kb on + strand at 942.765 kb on - strand at 942.765 kb on - strand at 942.801 kb on + strand at 942.801 kb on + strand at 942.801 kb on + strand at 942.801 kb on + strand at 942.802 kb on - strand at 942.802 kb on - strand at 942.806 kb on - strand at 942.850 kb on + strand at 943.185 kb on + strand, within ABZR87_RS20300 at 943.185 kb on + strand, within ABZR87_RS20300 at 943.185 kb on + strand, within ABZR87_RS20300 at 943.186 kb on - strand, within ABZR87_RS20300 at 943.186 kb on - strand, within ABZR87_RS20300 at 943.188 kb on - strand, within ABZR87_RS20300 at 943.542 kb on - strand at 943.542 kb on - strand at 943.616 kb on - strand, within ABZR87_RS20305 at 943.616 kb on - strand, within ABZR87_RS20305 at 943.672 kb on + strand, within ABZR87_RS20305 at 943.673 kb on - strand, within ABZR87_RS20305 at 943.744 kb on + strand, within ABZR87_RS20305 at 943.744 kb on + strand, within ABZR87_RS20305 at 943.744 kb on + strand, within ABZR87_RS20305 at 943.744 kb on + strand, within ABZR87_RS20305 at 943.745 kb on - strand, within ABZR87_RS20305 at 943.745 kb on - strand, within ABZR87_RS20305 at 943.807 kb on + strand, within ABZR87_RS20305 at 943.807 kb on + strand, within ABZR87_RS20305 at 943.808 kb on - strand, within ABZR87_RS20305 at 943.883 kb on - strand, within ABZR87_RS20305 at 944.006 kb on + strand, within ABZR87_RS20305 at 944.006 kb on + strand, within ABZR87_RS20305 at 944.007 kb on - strand, within ABZR87_RS20305 at 944.007 kb on - strand, within ABZR87_RS20305 at 944.026 kb on + strand, within ABZR87_RS20305 at 944.027 kb on - strand, within ABZR87_RS20305 at 944.042 kb on - strand, within ABZR87_RS20305 at 944.042 kb on - strand, within ABZR87_RS20305 at 944.042 kb on - strand, within ABZR87_RS20305 at 944.182 kb on + strand, within ABZR87_RS20305 at 944.182 kb on + strand, within ABZR87_RS20305 at 944.182 kb on + strand, within ABZR87_RS20305 at 944.182 kb on + strand, within ABZR87_RS20305 at 944.182 kb on + strand, within ABZR87_RS20305 at 944.230 kb on + strand, within ABZR87_RS20305 at 944.231 kb on - strand, within ABZR87_RS20305
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 941,986 + ABZR87_RS20295 0.19 +0.8 941,987 - ABZR87_RS20295 0.19 -0.6 941,987 - ABZR87_RS20295 0.19 -2.1 941,987 - ABZR87_RS20295 0.19 +2.0 941,987 - ABZR87_RS20295 0.19 -0.7 941,987 - ABZR87_RS20295 0.19 -0.1 941,987 - ABZR87_RS20295 0.19 -0.8 941,987 - ABZR87_RS20295 0.19 +0.7 942,031 + ABZR87_RS20295 0.25 +1.8 942,032 - ABZR87_RS20295 0.25 +0.5 942,032 - ABZR87_RS20295 0.25 +1.4 942,217 + ABZR87_RS20295 0.48 +3.1 942,217 + ABZR87_RS20295 0.48 -0.8 942,217 + ABZR87_RS20295 0.48 +0.5 942,217 + ABZR87_RS20295 0.48 +1.1 942,218 - ABZR87_RS20295 0.48 -1.5 942,218 - ABZR87_RS20295 0.48 +1.8 942,218 - ABZR87_RS20295 0.48 -1.1 942,391 + ABZR87_RS20295 0.70 +2.2 942,523 + ABZR87_RS20295 0.87 +0.2 942,523 + ABZR87_RS20295 0.87 -1.3 942,524 - ABZR87_RS20295 0.87 +3.5 942,524 - ABZR87_RS20295 0.87 +0.8 942,524 - ABZR87_RS20295 0.87 +1.0 942,547 + -1.0 942,548 - +4.3 942,574 + -0.9 942,575 - -1.2 942,575 - +0.8 942,575 - +0.6 942,575 - +0.2 942,575 - +0.1 942,575 - +3.9 942,575 - +3.6 942,580 + -0.5 942,581 - -0.9 942,616 + +0.8 942,639 + -0.6 942,640 - +0.6 942,640 - +2.4 942,642 + -1.8 942,764 + -2.6 942,764 + -1.6 942,764 + -0.4 942,764 + +1.7 942,765 - -1.4 942,765 - -2.0 942,801 + -0.1 942,801 + -0.7 942,801 + +0.9 942,801 + -0.6 942,802 - +0.2 942,802 - -1.4 942,806 - -0.1 942,850 + -1.5 943,185 + ABZR87_RS20300 0.53 -1.2 943,185 + ABZR87_RS20300 0.53 -0.9 943,185 + ABZR87_RS20300 0.53 -1.3 943,186 - ABZR87_RS20300 0.53 -2.5 943,186 - ABZR87_RS20300 0.53 -0.5 943,188 - ABZR87_RS20300 0.53 -2.2 943,542 - -1.5 943,542 - +1.4 943,616 - ABZR87_RS20305 0.10 +0.8 943,616 - ABZR87_RS20305 0.10 -0.2 943,672 + ABZR87_RS20305 0.15 +1.0 943,673 - ABZR87_RS20305 0.15 +1.4 943,744 + ABZR87_RS20305 0.20 -2.7 943,744 + ABZR87_RS20305 0.20 -0.1 943,744 + ABZR87_RS20305 0.20 -0.3 943,744 + ABZR87_RS20305 0.20 -0.8 943,745 - ABZR87_RS20305 0.20 -1.9 943,745 - ABZR87_RS20305 0.20 +0.2 943,807 + ABZR87_RS20305 0.25 -0.1 943,807 + ABZR87_RS20305 0.25 -0.1 943,808 - ABZR87_RS20305 0.25 -0.1 943,883 - ABZR87_RS20305 0.31 +0.1 944,006 + ABZR87_RS20305 0.40 +0.6 944,006 + ABZR87_RS20305 0.40 +0.8 944,007 - ABZR87_RS20305 0.40 +1.7 944,007 - ABZR87_RS20305 0.40 +0.8 944,026 + ABZR87_RS20305 0.42 -2.2 944,027 - ABZR87_RS20305 0.42 -0.7 944,042 - ABZR87_RS20305 0.43 +0.8 944,042 - ABZR87_RS20305 0.43 -2.2 944,042 - ABZR87_RS20305 0.43 -0.8 944,182 + ABZR87_RS20305 0.54 +4.0 944,182 + ABZR87_RS20305 0.54 -1.2 944,182 + ABZR87_RS20305 0.54 -0.1 944,182 + ABZR87_RS20305 0.54 -1.8 944,182 + ABZR87_RS20305 0.54 -1.5 944,230 + ABZR87_RS20305 0.57 -1.0 944,231 - ABZR87_RS20305 0.58 +0.5
Or see this region's nucleotide sequence