Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20225 and ABZR87_RS20230 are separated by 68 nucleotides ABZR87_RS20230 and ABZR87_RS20235 are separated by 105 nucleotides ABZR87_RS20235 and ABZR87_RS20240 overlap by 8 nucleotides ABZR87_RS20240 and ABZR87_RS20245 are separated by 34 nucleotides
ABZR87_RS20225: ABZR87_RS20225 - type VI secretion system baseplate subunit TssE, at 925,680 to 926,153
_RS20225
ABZR87_RS20230: ABZR87_RS20230 - Hcp family type VI secretion system effector, at 926,222 to 926,725
_RS20230
ABZR87_RS20235: ABZR87_RS20235 - type VI secretion system contractile sheath large subunit, at 926,831 to 928,315
_RS20235
ABZR87_RS20240: ABZR87_RS20240 - type VI secretion system contractile sheath small subunit, at 928,308 to 928,820
_RS20240
ABZR87_RS20245: ABZR87_RS20245 - hypothetical protein, at 928,855 to 929,442
_RS20245
Position (kb) 926
927
928
929 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 925.894 kb on + strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.895 kb on - strand, within ABZR87_RS20225 at 925.948 kb on + strand, within ABZR87_RS20225 at 925.949 kb on - strand, within ABZR87_RS20225 at 925.949 kb on - strand, within ABZR87_RS20225 at 926.153 kb on + strand at 926.153 kb on + strand at 926.153 kb on + strand at 926.153 kb on + strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.154 kb on - strand at 926.161 kb on + strand at 926.161 kb on + strand at 926.310 kb on + strand, within ABZR87_RS20230 at 926.310 kb on + strand, within ABZR87_RS20230 at 926.311 kb on - strand, within ABZR87_RS20230 at 926.332 kb on - strand, within ABZR87_RS20230 at 926.424 kb on + strand, within ABZR87_RS20230 at 926.424 kb on + strand, within ABZR87_RS20230 at 926.508 kb on + strand, within ABZR87_RS20230 at 926.508 kb on + strand, within ABZR87_RS20230 at 926.508 kb on + strand, within ABZR87_RS20230 at 926.509 kb on - strand, within ABZR87_RS20230 at 926.712 kb on + strand at 926.712 kb on + strand at 926.712 kb on + strand at 926.712 kb on + strand at 926.713 kb on - strand at 926.713 kb on - strand at 926.716 kb on + strand at 926.717 kb on - strand at 926.717 kb on - strand at 926.719 kb on - strand at 926.726 kb on - strand at 926.726 kb on - strand at 926.726 kb on - strand at 926.726 kb on - strand at 926.743 kb on + strand at 926.743 kb on + strand at 926.743 kb on + strand at 926.743 kb on + strand at 926.743 kb on + strand at 926.758 kb on + strand at 926.758 kb on + strand at 926.759 kb on - strand at 926.790 kb on + strand at 926.790 kb on + strand at 926.832 kb on + strand at 926.833 kb on - strand at 926.928 kb on + strand at 926.928 kb on + strand at 926.928 kb on + strand at 926.928 kb on + strand at 926.929 kb on - strand at 926.929 kb on - strand at 926.929 kb on - strand at 927.030 kb on + strand, within ABZR87_RS20235 at 927.030 kb on + strand, within ABZR87_RS20235 at 927.031 kb on - strand, within ABZR87_RS20235 at 927.118 kb on - strand, within ABZR87_RS20235 at 927.118 kb on - strand, within ABZR87_RS20235 at 927.147 kb on + strand, within ABZR87_RS20235 at 927.147 kb on + strand, within ABZR87_RS20235 at 927.147 kb on + strand, within ABZR87_RS20235 at 927.148 kb on - strand, within ABZR87_RS20235 at 927.198 kb on + strand, within ABZR87_RS20235 at 927.199 kb on - strand, within ABZR87_RS20235 at 927.199 kb on - strand, within ABZR87_RS20235 at 927.243 kb on + strand, within ABZR87_RS20235 at 927.244 kb on - strand, within ABZR87_RS20235 at 927.495 kb on + strand, within ABZR87_RS20235 at 927.495 kb on + strand, within ABZR87_RS20235 at 927.495 kb on + strand, within ABZR87_RS20235 at 927.496 kb on - strand, within ABZR87_RS20235 at 927.496 kb on - strand, within ABZR87_RS20235 at 927.571 kb on - strand, within ABZR87_RS20235 at 927.612 kb on + strand, within ABZR87_RS20235 at 927.612 kb on + strand, within ABZR87_RS20235 at 927.612 kb on + strand, within ABZR87_RS20235 at 927.612 kb on + strand, within ABZR87_RS20235 at 927.612 kb on + strand, within ABZR87_RS20235 at 927.613 kb on - strand, within ABZR87_RS20235 at 927.655 kb on - strand, within ABZR87_RS20235 at 927.655 kb on - strand, within ABZR87_RS20235 at 927.798 kb on + strand, within ABZR87_RS20235 at 927.798 kb on + strand, within ABZR87_RS20235 at 927.798 kb on + strand, within ABZR87_RS20235 at 927.798 kb on + strand, within ABZR87_RS20235 at 927.798 kb on + strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.799 kb on - strand, within ABZR87_RS20235 at 927.828 kb on + strand, within ABZR87_RS20235 at 927.886 kb on - strand, within ABZR87_RS20235 at 927.886 kb on - strand, within ABZR87_RS20235 at 927.886 kb on - strand, within ABZR87_RS20235 at 928.014 kb on + strand, within ABZR87_RS20235 at 928.014 kb on + strand, within ABZR87_RS20235 at 928.015 kb on - strand, within ABZR87_RS20235 at 928.133 kb on + strand, within ABZR87_RS20235 at 928.133 kb on + strand, within ABZR87_RS20235 at 928.134 kb on - strand, within ABZR87_RS20235 at 928.134 kb on - strand, within ABZR87_RS20235 at 928.134 kb on - strand, within ABZR87_RS20235 at 928.753 kb on + strand, within ABZR87_RS20240 at 928.753 kb on + strand, within ABZR87_RS20240 at 928.753 kb on + strand, within ABZR87_RS20240 at 928.753 kb on + strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.754 kb on - strand, within ABZR87_RS20240 at 928.800 kb on + strand at 928.800 kb on + strand at 928.801 kb on - strand at 929.219 kb on + strand, within ABZR87_RS20245 at 929.220 kb on - strand, within ABZR87_RS20245 at 929.300 kb on + strand, within ABZR87_RS20245 at 929.301 kb on - strand, within ABZR87_RS20245 at 929.301 kb on - strand, within ABZR87_RS20245
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 925,894 + ABZR87_RS20225 0.45 +1.2 925,895 - ABZR87_RS20225 0.45 -1.0 925,895 - ABZR87_RS20225 0.45 -0.5 925,895 - ABZR87_RS20225 0.45 -1.4 925,895 - ABZR87_RS20225 0.45 -0.3 925,948 + ABZR87_RS20225 0.57 -0.3 925,949 - ABZR87_RS20225 0.57 +1.8 925,949 - ABZR87_RS20225 0.57 -1.5 926,153 + +1.1 926,153 + -0.0 926,153 + +0.6 926,153 + -0.8 926,154 - +0.0 926,154 - +0.9 926,154 - +0.9 926,154 - +0.2 926,154 - +0.7 926,154 - -0.8 926,161 + -1.4 926,161 + +0.7 926,310 + ABZR87_RS20230 0.17 -0.3 926,310 + ABZR87_RS20230 0.17 +0.4 926,311 - ABZR87_RS20230 0.18 -0.6 926,332 - ABZR87_RS20230 0.22 -0.6 926,424 + ABZR87_RS20230 0.40 -0.7 926,424 + ABZR87_RS20230 0.40 +0.6 926,508 + ABZR87_RS20230 0.57 -1.8 926,508 + ABZR87_RS20230 0.57 -0.7 926,508 + ABZR87_RS20230 0.57 +0.1 926,509 - ABZR87_RS20230 0.57 -0.2 926,712 + +2.1 926,712 + -0.5 926,712 + +0.4 926,712 + -0.5 926,713 - -1.3 926,713 - +3.7 926,716 + +0.2 926,717 - +0.5 926,717 - +0.9 926,719 - +1.0 926,726 - -0.2 926,726 - +0.1 926,726 - -0.4 926,726 - -0.2 926,743 + -1.2 926,743 + -1.1 926,743 + -0.0 926,743 + -0.3 926,743 + -2.6 926,758 + +3.2 926,758 + +2.0 926,759 - +0.2 926,790 + +1.4 926,790 + -1.3 926,832 + -1.7 926,833 - +0.1 926,928 + -0.7 926,928 + -0.3 926,928 + -1.4 926,928 + +0.8 926,929 - -0.8 926,929 - -1.0 926,929 - +1.0 927,030 + ABZR87_RS20235 0.13 +0.6 927,030 + ABZR87_RS20235 0.13 -1.7 927,031 - ABZR87_RS20235 0.13 +0.7 927,118 - ABZR87_RS20235 0.19 -2.0 927,118 - ABZR87_RS20235 0.19 -0.5 927,147 + ABZR87_RS20235 0.21 +0.2 927,147 + ABZR87_RS20235 0.21 +2.7 927,147 + ABZR87_RS20235 0.21 -3.0 927,148 - ABZR87_RS20235 0.21 -0.0 927,198 + ABZR87_RS20235 0.25 +0.0 927,199 - ABZR87_RS20235 0.25 -0.0 927,199 - ABZR87_RS20235 0.25 -0.2 927,243 + ABZR87_RS20235 0.28 +2.0 927,244 - ABZR87_RS20235 0.28 +0.2 927,495 + ABZR87_RS20235 0.45 +2.0 927,495 + ABZR87_RS20235 0.45 +0.9 927,495 + ABZR87_RS20235 0.45 +0.8 927,496 - ABZR87_RS20235 0.45 -1.9 927,496 - ABZR87_RS20235 0.45 +1.8 927,571 - ABZR87_RS20235 0.50 -1.9 927,612 + ABZR87_RS20235 0.53 -1.3 927,612 + ABZR87_RS20235 0.53 -2.7 927,612 + ABZR87_RS20235 0.53 +0.5 927,612 + ABZR87_RS20235 0.53 +2.3 927,612 + ABZR87_RS20235 0.53 +2.4 927,613 - ABZR87_RS20235 0.53 -0.5 927,655 - ABZR87_RS20235 0.55 -0.8 927,655 - ABZR87_RS20235 0.55 -0.9 927,798 + ABZR87_RS20235 0.65 +0.6 927,798 + ABZR87_RS20235 0.65 +2.2 927,798 + ABZR87_RS20235 0.65 -1.5 927,798 + ABZR87_RS20235 0.65 -1.1 927,798 + ABZR87_RS20235 0.65 -0.5 927,799 - ABZR87_RS20235 0.65 +1.7 927,799 - ABZR87_RS20235 0.65 -1.2 927,799 - ABZR87_RS20235 0.65 +0.1 927,799 - ABZR87_RS20235 0.65 -1.3 927,799 - ABZR87_RS20235 0.65 +0.5 927,799 - ABZR87_RS20235 0.65 +1.5 927,799 - ABZR87_RS20235 0.65 -0.9 927,799 - ABZR87_RS20235 0.65 -1.2 927,799 - ABZR87_RS20235 0.65 -2.6 927,799 - ABZR87_RS20235 0.65 -0.9 927,799 - ABZR87_RS20235 0.65 -1.4 927,828 + ABZR87_RS20235 0.67 -0.2 927,886 - ABZR87_RS20235 0.71 -1.8 927,886 - ABZR87_RS20235 0.71 +0.2 927,886 - ABZR87_RS20235 0.71 +0.7 928,014 + ABZR87_RS20235 0.80 +4.3 928,014 + ABZR87_RS20235 0.80 -0.1 928,015 - ABZR87_RS20235 0.80 +1.1 928,133 + ABZR87_RS20235 0.88 +0.2 928,133 + ABZR87_RS20235 0.88 -0.3 928,134 - ABZR87_RS20235 0.88 -0.4 928,134 - ABZR87_RS20235 0.88 -1.1 928,134 - ABZR87_RS20235 0.88 -1.0 928,753 + ABZR87_RS20240 0.87 +0.5 928,753 + ABZR87_RS20240 0.87 +3.4 928,753 + ABZR87_RS20240 0.87 +0.3 928,753 + ABZR87_RS20240 0.87 -0.1 928,754 - ABZR87_RS20240 0.87 +0.2 928,754 - ABZR87_RS20240 0.87 -0.4 928,754 - ABZR87_RS20240 0.87 +0.6 928,754 - ABZR87_RS20240 0.87 +0.4 928,754 - ABZR87_RS20240 0.87 +1.1 928,754 - ABZR87_RS20240 0.87 +1.6 928,754 - ABZR87_RS20240 0.87 +0.0 928,800 + +0.8 928,800 + -0.4 928,801 - +1.4 929,219 + ABZR87_RS20245 0.62 +0.2 929,220 - ABZR87_RS20245 0.62 +0.7 929,300 + ABZR87_RS20245 0.76 +1.3 929,301 - ABZR87_RS20245 0.76 -0.2 929,301 - ABZR87_RS20245 0.76 -0.8
Or see this region's nucleotide sequence