Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19470 and ABZR87_RS19475 are separated by 38 nucleotides ABZR87_RS19475 and ABZR87_RS19480 are separated by 173 nucleotides
ABZR87_RS19470: ABZR87_RS19470 - UDP-glucose 4-epimerase GalE, at 737,725 to 738,750
_RS19470
ABZR87_RS19475: ABZR87_RS19475 - PAS domain-containing protein, at 738,789 to 740,216
_RS19475
ABZR87_RS19480: ABZR87_RS19480 - methyl-accepting chemotaxis protein, at 740,390 to 741,931
_RS19480
Position (kb) 738
739
740
741 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 737.906 kb on + strand, within ABZR87_RS19470 at 737.906 kb on + strand, within ABZR87_RS19470 at 737.906 kb on + strand, within ABZR87_RS19470 at 737.906 kb on + strand, within ABZR87_RS19470 at 737.906 kb on + strand, within ABZR87_RS19470 at 737.906 kb on + strand, within ABZR87_RS19470 at 738.016 kb on + strand, within ABZR87_RS19470 at 738.016 kb on + strand, within ABZR87_RS19470 at 738.016 kb on + strand, within ABZR87_RS19470 at 738.019 kb on + strand, within ABZR87_RS19470 at 738.020 kb on - strand, within ABZR87_RS19470 at 738.112 kb on + strand, within ABZR87_RS19470 at 738.112 kb on + strand, within ABZR87_RS19470 at 738.112 kb on + strand, within ABZR87_RS19470 at 738.112 kb on + strand, within ABZR87_RS19470 at 738.112 kb on + strand, within ABZR87_RS19470 at 738.112 kb on + strand, within ABZR87_RS19470 at 738.113 kb on - strand, within ABZR87_RS19470 at 738.113 kb on - strand, within ABZR87_RS19470 at 738.113 kb on - strand, within ABZR87_RS19470 at 738.113 kb on - strand, within ABZR87_RS19470 at 738.113 kb on - strand, within ABZR87_RS19470 at 738.127 kb on - strand, within ABZR87_RS19470 at 738.247 kb on + strand, within ABZR87_RS19470 at 738.247 kb on + strand, within ABZR87_RS19470 at 738.248 kb on - strand, within ABZR87_RS19470 at 738.256 kb on + strand, within ABZR87_RS19470 at 738.256 kb on + strand, within ABZR87_RS19470 at 738.257 kb on - strand, within ABZR87_RS19470 at 738.257 kb on - strand, within ABZR87_RS19470 at 738.257 kb on - strand, within ABZR87_RS19470 at 738.334 kb on + strand, within ABZR87_RS19470 at 738.334 kb on + strand, within ABZR87_RS19470 at 738.334 kb on + strand, within ABZR87_RS19470 at 738.334 kb on + strand, within ABZR87_RS19470 at 738.335 kb on + strand, within ABZR87_RS19470 at 738.335 kb on - strand, within ABZR87_RS19470 at 738.335 kb on - strand, within ABZR87_RS19470 at 738.335 kb on - strand, within ABZR87_RS19470 at 738.335 kb on - strand, within ABZR87_RS19470 at 738.424 kb on + strand, within ABZR87_RS19470 at 738.424 kb on + strand, within ABZR87_RS19470 at 738.424 kb on + strand, within ABZR87_RS19470 at 738.424 kb on + strand, within ABZR87_RS19470 at 738.425 kb on - strand, within ABZR87_RS19470 at 738.425 kb on - strand, within ABZR87_RS19470 at 738.425 kb on - strand, within ABZR87_RS19470 at 738.425 kb on - strand, within ABZR87_RS19470 at 738.553 kb on + strand, within ABZR87_RS19470 at 738.583 kb on + strand, within ABZR87_RS19470 at 738.625 kb on + strand, within ABZR87_RS19470 at 738.625 kb on + strand, within ABZR87_RS19470 at 738.626 kb on - strand, within ABZR87_RS19470 at 738.626 kb on - strand, within ABZR87_RS19470 at 738.626 kb on - strand, within ABZR87_RS19470 at 738.626 kb on - strand, within ABZR87_RS19470 at 738.821 kb on + strand at 738.821 kb on + strand at 738.821 kb on + strand at 738.821 kb on + strand at 738.821 kb on + strand at 738.822 kb on - strand at 739.144 kb on + strand, within ABZR87_RS19475 at 739.192 kb on + strand, within ABZR87_RS19475 at 739.193 kb on - strand, within ABZR87_RS19475 at 739.238 kb on + strand, within ABZR87_RS19475 at 739.239 kb on - strand, within ABZR87_RS19475 at 739.392 kb on + strand, within ABZR87_RS19475 at 739.393 kb on - strand, within ABZR87_RS19475 at 739.518 kb on + strand, within ABZR87_RS19475 at 739.620 kb on + strand, within ABZR87_RS19475 at 739.620 kb on + strand, within ABZR87_RS19475 at 739.620 kb on + strand, within ABZR87_RS19475 at 739.753 kb on - strand, within ABZR87_RS19475 at 739.754 kb on + strand, within ABZR87_RS19475 at 739.754 kb on + strand, within ABZR87_RS19475 at 739.754 kb on + strand, within ABZR87_RS19475 at 739.754 kb on + strand, within ABZR87_RS19475 at 739.755 kb on - strand, within ABZR87_RS19475 at 739.755 kb on - strand, within ABZR87_RS19475 at 739.755 kb on - strand, within ABZR87_RS19475 at 739.869 kb on + strand, within ABZR87_RS19475 at 739.870 kb on - strand, within ABZR87_RS19475 at 739.908 kb on + strand, within ABZR87_RS19475 at 739.909 kb on - strand, within ABZR87_RS19475 at 739.909 kb on - strand, within ABZR87_RS19475 at 739.909 kb on - strand, within ABZR87_RS19475 at 739.983 kb on - strand, within ABZR87_RS19475 at 740.237 kb on + strand at 740.261 kb on + strand at 740.261 kb on + strand at 740.261 kb on + strand at 740.261 kb on + strand at 740.262 kb on - strand at 740.262 kb on - strand at 740.298 kb on + strand at 740.318 kb on + strand at 740.319 kb on - strand at 740.561 kb on + strand, within ABZR87_RS19480 at 740.561 kb on + strand, within ABZR87_RS19480 at 740.561 kb on + strand, within ABZR87_RS19480 at 740.562 kb on - strand, within ABZR87_RS19480 at 740.657 kb on + strand, within ABZR87_RS19480 at 740.658 kb on - strand, within ABZR87_RS19480 at 740.813 kb on + strand, within ABZR87_RS19480 at 740.861 kb on + strand, within ABZR87_RS19480 at 740.861 kb on + strand, within ABZR87_RS19480 at 740.862 kb on - strand, within ABZR87_RS19480 at 740.862 kb on - strand, within ABZR87_RS19480 at 740.862 kb on - strand, within ABZR87_RS19480 at 740.862 kb on - strand, within ABZR87_RS19480 at 740.870 kb on + strand, within ABZR87_RS19480 at 740.871 kb on - strand, within ABZR87_RS19480 at 740.871 kb on - strand, within ABZR87_RS19480 at 740.873 kb on + strand, within ABZR87_RS19480 at 740.873 kb on + strand, within ABZR87_RS19480 at 740.874 kb on - strand, within ABZR87_RS19480 at 740.909 kb on + strand, within ABZR87_RS19480 at 740.909 kb on + strand, within ABZR87_RS19480 at 740.909 kb on + strand, within ABZR87_RS19480 at 740.910 kb on - strand, within ABZR87_RS19480 at 740.910 kb on - strand, within ABZR87_RS19480 at 740.910 kb on - strand, within ABZR87_RS19480 at 740.912 kb on - strand, within ABZR87_RS19480 at 740.912 kb on - strand, within ABZR87_RS19480 at 740.912 kb on - strand, within ABZR87_RS19480
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 737,906 + ABZR87_RS19470 0.18 +1.0 737,906 + ABZR87_RS19470 0.18 +0.6 737,906 + ABZR87_RS19470 0.18 -1.7 737,906 + ABZR87_RS19470 0.18 -2.7 737,906 + ABZR87_RS19470 0.18 +1.2 737,906 + ABZR87_RS19470 0.18 +1.3 738,016 + ABZR87_RS19470 0.28 +0.2 738,016 + ABZR87_RS19470 0.28 +6.1 738,016 + ABZR87_RS19470 0.28 -0.6 738,019 + ABZR87_RS19470 0.29 +0.2 738,020 - ABZR87_RS19470 0.29 +0.7 738,112 + ABZR87_RS19470 0.38 +6.5 738,112 + ABZR87_RS19470 0.38 -0.5 738,112 + ABZR87_RS19470 0.38 +0.7 738,112 + ABZR87_RS19470 0.38 +0.2 738,112 + ABZR87_RS19470 0.38 -0.4 738,112 + ABZR87_RS19470 0.38 -1.0 738,113 - ABZR87_RS19470 0.38 -1.4 738,113 - ABZR87_RS19470 0.38 +0.8 738,113 - ABZR87_RS19470 0.38 +0.0 738,113 - ABZR87_RS19470 0.38 -0.8 738,113 - ABZR87_RS19470 0.38 +0.8 738,127 - ABZR87_RS19470 0.39 +1.3 738,247 + ABZR87_RS19470 0.51 -0.8 738,247 + ABZR87_RS19470 0.51 +1.0 738,248 - ABZR87_RS19470 0.51 +1.8 738,256 + ABZR87_RS19470 0.52 -1.8 738,256 + ABZR87_RS19470 0.52 -0.8 738,257 - ABZR87_RS19470 0.52 -0.1 738,257 - ABZR87_RS19470 0.52 +1.3 738,257 - ABZR87_RS19470 0.52 -1.6 738,334 + ABZR87_RS19470 0.59 -1.4 738,334 + ABZR87_RS19470 0.59 -1.9 738,334 + ABZR87_RS19470 0.59 +0.2 738,334 + ABZR87_RS19470 0.59 +1.6 738,335 + ABZR87_RS19470 0.59 +3.1 738,335 - ABZR87_RS19470 0.59 -1.0 738,335 - ABZR87_RS19470 0.59 -0.6 738,335 - ABZR87_RS19470 0.59 -1.8 738,335 - ABZR87_RS19470 0.59 +0.1 738,424 + ABZR87_RS19470 0.68 -1.6 738,424 + ABZR87_RS19470 0.68 -0.4 738,424 + ABZR87_RS19470 0.68 -1.1 738,424 + ABZR87_RS19470 0.68 -1.2 738,425 - ABZR87_RS19470 0.68 -0.7 738,425 - ABZR87_RS19470 0.68 -1.2 738,425 - ABZR87_RS19470 0.68 +0.5 738,425 - ABZR87_RS19470 0.68 -0.7 738,553 + ABZR87_RS19470 0.81 +0.0 738,583 + ABZR87_RS19470 0.84 -1.5 738,625 + ABZR87_RS19470 0.88 +0.5 738,625 + ABZR87_RS19470 0.88 +0.5 738,626 - ABZR87_RS19470 0.88 -1.7 738,626 - ABZR87_RS19470 0.88 -1.4 738,626 - ABZR87_RS19470 0.88 +3.8 738,626 - ABZR87_RS19470 0.88 -0.4 738,821 + +3.8 738,821 + +0.1 738,821 + +1.7 738,821 + -1.2 738,821 + -0.4 738,822 - +1.3 739,144 + ABZR87_RS19475 0.25 -1.0 739,192 + ABZR87_RS19475 0.28 -0.4 739,193 - ABZR87_RS19475 0.28 -0.4 739,238 + ABZR87_RS19475 0.31 +0.1 739,239 - ABZR87_RS19475 0.32 -0.9 739,392 + ABZR87_RS19475 0.42 +0.2 739,393 - ABZR87_RS19475 0.42 +0.7 739,518 + ABZR87_RS19475 0.51 +0.6 739,620 + ABZR87_RS19475 0.58 -1.9 739,620 + ABZR87_RS19475 0.58 +0.4 739,620 + ABZR87_RS19475 0.58 -1.7 739,753 - ABZR87_RS19475 0.68 -0.7 739,754 + ABZR87_RS19475 0.68 -0.0 739,754 + ABZR87_RS19475 0.68 +1.2 739,754 + ABZR87_RS19475 0.68 -0.0 739,754 + ABZR87_RS19475 0.68 +0.3 739,755 - ABZR87_RS19475 0.68 -0.7 739,755 - ABZR87_RS19475 0.68 -1.1 739,755 - ABZR87_RS19475 0.68 -0.7 739,869 + ABZR87_RS19475 0.76 -0.6 739,870 - ABZR87_RS19475 0.76 +3.3 739,908 + ABZR87_RS19475 0.78 -0.6 739,909 - ABZR87_RS19475 0.78 -0.5 739,909 - ABZR87_RS19475 0.78 -0.7 739,909 - ABZR87_RS19475 0.78 -1.9 739,983 - ABZR87_RS19475 0.84 +1.2 740,237 + -0.2 740,261 + -2.0 740,261 + -0.7 740,261 + -0.5 740,261 + +0.0 740,262 - -0.3 740,262 - -1.1 740,298 + +1.2 740,318 + -0.9 740,319 - -0.7 740,561 + ABZR87_RS19480 0.11 -1.3 740,561 + ABZR87_RS19480 0.11 -1.9 740,561 + ABZR87_RS19480 0.11 -1.8 740,562 - ABZR87_RS19480 0.11 +1.0 740,657 + ABZR87_RS19480 0.17 +0.9 740,658 - ABZR87_RS19480 0.17 +2.5 740,813 + ABZR87_RS19480 0.27 -0.3 740,861 + ABZR87_RS19480 0.31 -2.2 740,861 + ABZR87_RS19480 0.31 +0.8 740,862 - ABZR87_RS19480 0.31 +0.2 740,862 - ABZR87_RS19480 0.31 -0.3 740,862 - ABZR87_RS19480 0.31 +0.6 740,862 - ABZR87_RS19480 0.31 -1.6 740,870 + ABZR87_RS19480 0.31 -1.3 740,871 - ABZR87_RS19480 0.31 +2.9 740,871 - ABZR87_RS19480 0.31 -0.5 740,873 + ABZR87_RS19480 0.31 -1.0 740,873 + ABZR87_RS19480 0.31 +2.2 740,874 - ABZR87_RS19480 0.31 -1.3 740,909 + ABZR87_RS19480 0.34 -0.8 740,909 + ABZR87_RS19480 0.34 +0.5 740,909 + ABZR87_RS19480 0.34 +1.5 740,910 - ABZR87_RS19480 0.34 +1.3 740,910 - ABZR87_RS19480 0.34 +0.6 740,910 - ABZR87_RS19480 0.34 +0.2 740,912 - ABZR87_RS19480 0.34 -0.3 740,912 - ABZR87_RS19480 0.34 -0.1 740,912 - ABZR87_RS19480 0.34 +1.0
Or see this region's nucleotide sequence