Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18990 and ABZR87_RS18995 are separated by 116 nucleotides ABZR87_RS18995 and ABZR87_RS19000 are separated by 14 nucleotides ABZR87_RS19000 and ABZR87_RS19005 are separated by 650 nucleotides
ABZR87_RS18990: ABZR87_RS18990 - flagellar brake protein, at 618,549 to 619,454
_RS18990
ABZR87_RS18995: ABZR87_RS18995 - GtrA family protein, at 619,571 to 620,083
_RS18995
ABZR87_RS19000: ABZR87_RS19000 - hypothetical protein, at 620,098 to 620,580
_RS19000
ABZR87_RS19005: ABZR87_RS19005 - sensor domain-containing diguanylate cyclase, at 621,231 to 622,577
_RS19005
Position (kb) 620
621 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 619.099 kb on + strand, within ABZR87_RS18990 at 619.099 kb on + strand, within ABZR87_RS18990 at 619.202 kb on + strand, within ABZR87_RS18990 at 619.202 kb on + strand, within ABZR87_RS18990 at 619.202 kb on + strand, within ABZR87_RS18990 at 619.203 kb on - strand, within ABZR87_RS18990 at 619.203 kb on - strand, within ABZR87_RS18990 at 619.203 kb on - strand, within ABZR87_RS18990 at 619.203 kb on - strand, within ABZR87_RS18990 at 619.203 kb on - strand, within ABZR87_RS18990 at 619.259 kb on + strand, within ABZR87_RS18990 at 619.260 kb on - strand, within ABZR87_RS18990 at 619.495 kb on + strand at 619.495 kb on + strand at 619.495 kb on + strand at 619.520 kb on + strand at 619.530 kb on + strand at 619.530 kb on + strand at 619.531 kb on - strand at 619.667 kb on + strand, within ABZR87_RS18995 at 619.667 kb on + strand, within ABZR87_RS18995 at 619.667 kb on + strand, within ABZR87_RS18995 at 619.667 kb on + strand, within ABZR87_RS18995 at 619.668 kb on - strand, within ABZR87_RS18995 at 619.668 kb on - strand, within ABZR87_RS18995 at 619.668 kb on - strand, within ABZR87_RS18995 at 619.669 kb on + strand, within ABZR87_RS18995 at 619.669 kb on + strand, within ABZR87_RS18995 at 619.669 kb on + strand, within ABZR87_RS18995 at 619.669 kb on + strand, within ABZR87_RS18995 at 619.669 kb on + strand, within ABZR87_RS18995 at 619.670 kb on - strand, within ABZR87_RS18995 at 619.670 kb on - strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.703 kb on + strand, within ABZR87_RS18995 at 619.704 kb on - strand, within ABZR87_RS18995 at 619.704 kb on - strand, within ABZR87_RS18995 at 619.704 kb on - strand, within ABZR87_RS18995 at 619.790 kb on + strand, within ABZR87_RS18995 at 619.790 kb on + strand, within ABZR87_RS18995 at 619.790 kb on + strand, within ABZR87_RS18995 at 619.790 kb on + strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.791 kb on - strand, within ABZR87_RS18995 at 619.834 kb on + strand, within ABZR87_RS18995 at 619.925 kb on + strand, within ABZR87_RS18995 at 619.925 kb on + strand, within ABZR87_RS18995 at 619.925 kb on + strand, within ABZR87_RS18995 at 619.925 kb on + strand, within ABZR87_RS18995 at 619.926 kb on - strand, within ABZR87_RS18995 at 619.926 kb on - strand, within ABZR87_RS18995 at 619.926 kb on - strand, within ABZR87_RS18995 at 619.926 kb on - strand, within ABZR87_RS18995 at 619.926 kb on - strand, within ABZR87_RS18995 at 619.928 kb on + strand, within ABZR87_RS18995 at 619.928 kb on + strand, within ABZR87_RS18995 at 619.929 kb on - strand, within ABZR87_RS18995 at 619.929 kb on - strand, within ABZR87_RS18995 at 620.099 kb on + strand at 620.100 kb on - strand at 620.100 kb on - strand at 620.218 kb on + strand, within ABZR87_RS19000 at 620.218 kb on + strand, within ABZR87_RS19000 at 620.218 kb on + strand, within ABZR87_RS19000 at 620.218 kb on + strand, within ABZR87_RS19000 at 620.219 kb on - strand, within ABZR87_RS19000 at 620.219 kb on - strand, within ABZR87_RS19000 at 620.219 kb on - strand, within ABZR87_RS19000 at 620.219 kb on - strand, within ABZR87_RS19000 at 620.289 kb on + strand, within ABZR87_RS19000 at 620.289 kb on + strand, within ABZR87_RS19000 at 620.402 kb on + strand, within ABZR87_RS19000 at 620.402 kb on + strand, within ABZR87_RS19000 at 620.403 kb on - strand, within ABZR87_RS19000 at 620.505 kb on + strand, within ABZR87_RS19000 at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.580 kb on + strand at 620.581 kb on - strand at 620.581 kb on - strand at 620.581 kb on - strand at 620.581 kb on - strand at 620.647 kb on - strand at 620.647 kb on - strand at 620.648 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.658 kb on + strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.659 kb on - strand at 620.661 kb on + strand at 620.661 kb on + strand at 620.661 kb on + strand at 620.662 kb on - strand at 620.812 kb on + strand at 620.813 kb on - strand at 620.838 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.017 kb on + strand at 621.018 kb on - strand at 621.018 kb on - strand at 621.018 kb on - strand at 621.018 kb on - strand at 621.018 kb on - strand at 621.019 kb on + strand at 621.020 kb on - strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.252 kb on + strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.253 kb on - strand at 621.254 kb on + strand at 621.254 kb on + strand at 621.254 kb on + strand at 621.255 kb on - strand at 621.255 kb on - strand at 621.255 kb on - strand at 621.255 kb on - strand at 621.281 kb on - strand at 621.416 kb on + strand, within ABZR87_RS19005 at 621.416 kb on + strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.417 kb on - strand, within ABZR87_RS19005 at 621.497 kb on + strand, within ABZR87_RS19005 at 621.497 kb on + strand, within ABZR87_RS19005
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 619,099 + ABZR87_RS18990 0.61 +0.2 619,099 + ABZR87_RS18990 0.61 -2.1 619,202 + ABZR87_RS18990 0.72 +3.4 619,202 + ABZR87_RS18990 0.72 -2.5 619,202 + ABZR87_RS18990 0.72 -1.4 619,203 - ABZR87_RS18990 0.72 +1.4 619,203 - ABZR87_RS18990 0.72 +0.2 619,203 - ABZR87_RS18990 0.72 +0.7 619,203 - ABZR87_RS18990 0.72 +2.5 619,203 - ABZR87_RS18990 0.72 -0.8 619,259 + ABZR87_RS18990 0.78 +0.5 619,260 - ABZR87_RS18990 0.78 -0.8 619,495 + -0.1 619,495 + -2.3 619,495 + -1.6 619,520 + -0.1 619,530 + -0.1 619,530 + +0.5 619,531 - -1.1 619,667 + ABZR87_RS18995 0.19 -0.3 619,667 + ABZR87_RS18995 0.19 -0.4 619,667 + ABZR87_RS18995 0.19 -1.2 619,667 + ABZR87_RS18995 0.19 +0.3 619,668 - ABZR87_RS18995 0.19 +0.4 619,668 - ABZR87_RS18995 0.19 -1.5 619,668 - ABZR87_RS18995 0.19 -0.7 619,669 + ABZR87_RS18995 0.19 -2.1 619,669 + ABZR87_RS18995 0.19 +0.6 619,669 + ABZR87_RS18995 0.19 +1.4 619,669 + ABZR87_RS18995 0.19 -0.5 619,669 + ABZR87_RS18995 0.19 +0.6 619,670 - ABZR87_RS18995 0.19 +0.8 619,670 - ABZR87_RS18995 0.19 -0.3 619,703 + ABZR87_RS18995 0.26 -0.1 619,703 + ABZR87_RS18995 0.26 +1.4 619,703 + ABZR87_RS18995 0.26 +0.8 619,703 + ABZR87_RS18995 0.26 -0.2 619,703 + ABZR87_RS18995 0.26 -0.5 619,703 + ABZR87_RS18995 0.26 +1.3 619,703 + ABZR87_RS18995 0.26 -0.2 619,703 + ABZR87_RS18995 0.26 -0.5 619,703 + ABZR87_RS18995 0.26 +1.2 619,703 + ABZR87_RS18995 0.26 -2.1 619,703 + ABZR87_RS18995 0.26 +0.9 619,704 - ABZR87_RS18995 0.26 +0.6 619,704 - ABZR87_RS18995 0.26 +0.0 619,704 - ABZR87_RS18995 0.26 -1.0 619,790 + ABZR87_RS18995 0.43 -0.9 619,790 + ABZR87_RS18995 0.43 +0.6 619,790 + ABZR87_RS18995 0.43 +0.4 619,790 + ABZR87_RS18995 0.43 -0.1 619,791 - ABZR87_RS18995 0.43 +0.4 619,791 - ABZR87_RS18995 0.43 -0.3 619,791 - ABZR87_RS18995 0.43 +0.8 619,791 - ABZR87_RS18995 0.43 +0.4 619,791 - ABZR87_RS18995 0.43 -0.5 619,791 - ABZR87_RS18995 0.43 +0.1 619,791 - ABZR87_RS18995 0.43 -0.7 619,834 + ABZR87_RS18995 0.51 -0.0 619,925 + ABZR87_RS18995 0.69 +0.2 619,925 + ABZR87_RS18995 0.69 +1.2 619,925 + ABZR87_RS18995 0.69 -0.8 619,925 + ABZR87_RS18995 0.69 -0.3 619,926 - ABZR87_RS18995 0.69 -0.9 619,926 - ABZR87_RS18995 0.69 -1.1 619,926 - ABZR87_RS18995 0.69 -1.2 619,926 - ABZR87_RS18995 0.69 +0.2 619,926 - ABZR87_RS18995 0.69 -0.7 619,928 + ABZR87_RS18995 0.70 -1.0 619,928 + ABZR87_RS18995 0.70 -0.6 619,929 - ABZR87_RS18995 0.70 -0.3 619,929 - ABZR87_RS18995 0.70 -2.0 620,099 + -0.4 620,100 - -0.3 620,100 - +0.3 620,218 + ABZR87_RS19000 0.25 +2.3 620,218 + ABZR87_RS19000 0.25 +0.0 620,218 + ABZR87_RS19000 0.25 +0.2 620,218 + ABZR87_RS19000 0.25 -0.8 620,219 - ABZR87_RS19000 0.25 -1.5 620,219 - ABZR87_RS19000 0.25 +0.3 620,219 - ABZR87_RS19000 0.25 +0.4 620,219 - ABZR87_RS19000 0.25 -0.2 620,289 + ABZR87_RS19000 0.40 -1.6 620,289 + ABZR87_RS19000 0.40 -2.0 620,402 + ABZR87_RS19000 0.63 +1.4 620,402 + ABZR87_RS19000 0.63 -0.7 620,403 - ABZR87_RS19000 0.63 -1.4 620,505 + ABZR87_RS19000 0.84 -2.1 620,580 + -2.6 620,580 + -0.3 620,580 + -0.3 620,580 + -3.5 620,580 + -0.6 620,580 + -0.4 620,580 + -0.3 620,581 - +2.0 620,581 - -0.2 620,581 - -1.3 620,581 - +1.6 620,647 - -0.5 620,647 - -0.0 620,648 + -1.1 620,658 + -0.4 620,658 + +2.1 620,658 + -0.6 620,658 + +1.6 620,658 + +0.2 620,658 + -0.5 620,658 + -0.1 620,658 + -0.1 620,659 - +0.3 620,659 - -2.0 620,659 - +0.8 620,659 - -1.0 620,659 - -2.3 620,659 - +1.5 620,661 + +1.7 620,661 + +0.4 620,661 + +0.3 620,662 - +0.6 620,812 + +1.4 620,813 - +1.2 620,838 + -2.2 621,017 + -2.6 621,017 + -0.4 621,017 + +0.4 621,017 + +0.8 621,017 + -0.7 621,017 + +0.4 621,017 + -1.0 621,018 - -0.5 621,018 - +1.5 621,018 - +4.1 621,018 - +0.7 621,018 - -1.9 621,019 + +0.6 621,020 - -0.6 621,252 + +3.8 621,252 + +3.1 621,252 + +0.5 621,252 + +0.4 621,252 + +0.6 621,252 + -0.0 621,252 + -2.0 621,252 + -1.2 621,252 + +0.3 621,253 - -1.8 621,253 - +1.0 621,253 - -1.9 621,253 - +0.2 621,253 - +0.4 621,253 - +0.6 621,253 - -1.6 621,253 - +0.6 621,253 - +0.6 621,253 - +1.5 621,253 - -0.0 621,253 - -1.4 621,253 - +0.8 621,253 - +0.1 621,254 + +0.2 621,254 + -1.5 621,254 + +2.6 621,255 - +0.8 621,255 - +1.3 621,255 - +0.6 621,255 - +0.2 621,281 - +1.2 621,416 + ABZR87_RS19005 0.14 -0.7 621,416 + ABZR87_RS19005 0.14 +8.0 621,417 - ABZR87_RS19005 0.14 +2.2 621,417 - ABZR87_RS19005 0.14 +1.9 621,417 - ABZR87_RS19005 0.14 +1.4 621,417 - ABZR87_RS19005 0.14 +2.2 621,417 - ABZR87_RS19005 0.14 +1.3 621,417 - ABZR87_RS19005 0.14 -1.2 621,497 + ABZR87_RS19005 0.20 +4.0 621,497 + ABZR87_RS19005 0.20 -1.7
Or see this region's nucleotide sequence