Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18965 and ABZR87_RS18970 are separated by 185 nucleotides ABZR87_RS18970 and ABZR87_RS18975 are separated by 73 nucleotides ABZR87_RS18975 and ABZR87_RS18980 are separated by 291 nucleotides
ABZR87_RS18965: ABZR87_RS18965 - cardiolipin synthase, at 611,391 to 612,824
_RS18965
ABZR87_RS18970: ABZR87_RS18970 - phospholipase D family protein, at 613,010 to 614,743
_RS18970
ABZR87_RS18975: ABZR87_RS18975 - entericidin A/B family lipoprotein, at 614,817 to 614,957
_RS18975
ABZR87_RS18980: ABZR87_RS18980 - methyl-accepting chemotaxis protein, at 615,249 to 616,817
_RS18980
Position (kb) 613
614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 612.053 kb on + strand, within ABZR87_RS18965 at 612.053 kb on + strand, within ABZR87_RS18965 at 612.054 kb on - strand, within ABZR87_RS18965 at 612.059 kb on + strand, within ABZR87_RS18965 at 612.059 kb on + strand, within ABZR87_RS18965 at 612.097 kb on + strand, within ABZR87_RS18965 at 612.097 kb on + strand, within ABZR87_RS18965 at 612.097 kb on + strand, within ABZR87_RS18965 at 612.097 kb on + strand, within ABZR87_RS18965 at 612.097 kb on + strand, within ABZR87_RS18965 at 612.097 kb on + strand, within ABZR87_RS18965 at 612.098 kb on - strand, within ABZR87_RS18965 at 612.098 kb on - strand, within ABZR87_RS18965 at 612.098 kb on - strand, within ABZR87_RS18965 at 612.127 kb on + strand, within ABZR87_RS18965 at 612.128 kb on - strand, within ABZR87_RS18965 at 612.128 kb on - strand, within ABZR87_RS18965 at 612.257 kb on - strand, within ABZR87_RS18965 at 612.257 kb on - strand, within ABZR87_RS18965 at 612.301 kb on + strand, within ABZR87_RS18965 at 612.301 kb on + strand, within ABZR87_RS18965 at 612.301 kb on + strand, within ABZR87_RS18965 at 612.631 kb on + strand, within ABZR87_RS18965 at 612.664 kb on + strand, within ABZR87_RS18965 at 612.731 kb on + strand at 612.731 kb on + strand at 612.732 kb on - strand at 612.732 kb on - strand at 612.732 kb on - strand at 612.920 kb on + strand at 612.921 kb on - strand at 613.000 kb on + strand at 613.002 kb on + strand at 613.005 kb on - strand at 613.127 kb on - strand at 613.241 kb on + strand, within ABZR87_RS18970 at 613.241 kb on + strand, within ABZR87_RS18970 at 613.242 kb on - strand, within ABZR87_RS18970 at 613.242 kb on - strand, within ABZR87_RS18970 at 613.295 kb on + strand, within ABZR87_RS18970 at 613.295 kb on + strand, within ABZR87_RS18970 at 613.295 kb on + strand, within ABZR87_RS18970 at 613.296 kb on - strand, within ABZR87_RS18970 at 613.455 kb on + strand, within ABZR87_RS18970 at 613.455 kb on + strand, within ABZR87_RS18970 at 613.455 kb on + strand, within ABZR87_RS18970 at 613.455 kb on + strand, within ABZR87_RS18970 at 613.456 kb on - strand, within ABZR87_RS18970 at 613.505 kb on + strand, within ABZR87_RS18970 at 613.505 kb on + strand, within ABZR87_RS18970 at 613.616 kb on + strand, within ABZR87_RS18970 at 613.709 kb on + strand, within ABZR87_RS18970 at 613.709 kb on + strand, within ABZR87_RS18970 at 613.846 kb on + strand, within ABZR87_RS18970 at 613.846 kb on + strand, within ABZR87_RS18970 at 613.847 kb on - strand, within ABZR87_RS18970 at 614.192 kb on + strand, within ABZR87_RS18970 at 614.192 kb on + strand, within ABZR87_RS18970 at 614.193 kb on - strand, within ABZR87_RS18970 at 614.200 kb on - strand, within ABZR87_RS18970 at 614.321 kb on + strand, within ABZR87_RS18970 at 614.509 kb on + strand, within ABZR87_RS18970 at 614.594 kb on + strand at 614.605 kb on + strand at 614.605 kb on + strand at 614.605 kb on + strand at 614.605 kb on + strand at 614.606 kb on - strand at 614.741 kb on + strand at 614.742 kb on - strand at 614.818 kb on + strand at 614.818 kb on + strand at 614.818 kb on + strand at 614.818 kb on + strand at 614.818 kb on + strand at 614.818 kb on + strand at 614.818 kb on + strand at 614.819 kb on - strand at 614.819 kb on - strand at 614.819 kb on - strand at 614.819 kb on - strand at 614.819 kb on - strand at 614.819 kb on - strand at 614.819 kb on - strand at 614.903 kb on + strand, within ABZR87_RS18975 at 614.903 kb on + strand, within ABZR87_RS18975 at 614.903 kb on + strand, within ABZR87_RS18975 at 614.903 kb on + strand, within ABZR87_RS18975 at 615.027 kb on - strand at 615.038 kb on + strand at 615.038 kb on + strand at 615.039 kb on - strand at 615.082 kb on + strand at 615.083 kb on - strand at 615.094 kb on + strand at 615.095 kb on - strand at 615.136 kb on + strand at 615.136 kb on + strand at 615.136 kb on + strand at 615.137 kb on - strand at 615.158 kb on + strand at 615.304 kb on + strand at 615.304 kb on + strand at 615.384 kb on + strand at 615.384 kb on + strand at 615.385 kb on - strand at 615.684 kb on + strand, within ABZR87_RS18980 at 615.685 kb on - strand, within ABZR87_RS18980 at 615.685 kb on - strand, within ABZR87_RS18980 at 615.685 kb on - strand, within ABZR87_RS18980 at 615.685 kb on - strand, within ABZR87_RS18980 at 615.685 kb on - strand, within ABZR87_RS18980 at 615.730 kb on - strand, within ABZR87_RS18980
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 612,053 + ABZR87_RS18965 0.46 +0.8 612,053 + ABZR87_RS18965 0.46 -1.6 612,054 - ABZR87_RS18965 0.46 +0.3 612,059 + ABZR87_RS18965 0.47 -1.1 612,059 + ABZR87_RS18965 0.47 -1.1 612,097 + ABZR87_RS18965 0.49 -0.3 612,097 + ABZR87_RS18965 0.49 +0.8 612,097 + ABZR87_RS18965 0.49 -0.4 612,097 + ABZR87_RS18965 0.49 +1.4 612,097 + ABZR87_RS18965 0.49 -2.2 612,097 + ABZR87_RS18965 0.49 +0.4 612,098 - ABZR87_RS18965 0.49 -0.7 612,098 - ABZR87_RS18965 0.49 -0.6 612,098 - ABZR87_RS18965 0.49 -0.0 612,127 + ABZR87_RS18965 0.51 -0.2 612,128 - ABZR87_RS18965 0.51 -0.6 612,128 - ABZR87_RS18965 0.51 +0.7 612,257 - ABZR87_RS18965 0.60 -1.6 612,257 - ABZR87_RS18965 0.60 -0.5 612,301 + ABZR87_RS18965 0.63 -0.7 612,301 + ABZR87_RS18965 0.63 +0.4 612,301 + ABZR87_RS18965 0.63 +0.8 612,631 + ABZR87_RS18965 0.86 +1.0 612,664 + ABZR87_RS18965 0.89 +7.0 612,731 + +1.4 612,731 + -0.0 612,732 - -2.5 612,732 - -1.6 612,732 - +1.4 612,920 + +1.0 612,921 - +0.8 613,000 + -1.1 613,002 + -1.7 613,005 - -1.3 613,127 - -1.9 613,241 + ABZR87_RS18970 0.13 -2.4 613,241 + ABZR87_RS18970 0.13 +0.7 613,242 - ABZR87_RS18970 0.13 -0.1 613,242 - ABZR87_RS18970 0.13 +4.0 613,295 + ABZR87_RS18970 0.16 -1.7 613,295 + ABZR87_RS18970 0.16 -0.3 613,295 + ABZR87_RS18970 0.16 -0.6 613,296 - ABZR87_RS18970 0.16 +1.6 613,455 + ABZR87_RS18970 0.26 -0.6 613,455 + ABZR87_RS18970 0.26 -0.6 613,455 + ABZR87_RS18970 0.26 -0.2 613,455 + ABZR87_RS18970 0.26 +0.8 613,456 - ABZR87_RS18970 0.26 +2.8 613,505 + ABZR87_RS18970 0.29 -0.7 613,505 + ABZR87_RS18970 0.29 -0.8 613,616 + ABZR87_RS18970 0.35 -2.0 613,709 + ABZR87_RS18970 0.40 -1.7 613,709 + ABZR87_RS18970 0.40 +2.5 613,846 + ABZR87_RS18970 0.48 -1.3 613,846 + ABZR87_RS18970 0.48 +0.4 613,847 - ABZR87_RS18970 0.48 -0.5 614,192 + ABZR87_RS18970 0.68 +0.5 614,192 + ABZR87_RS18970 0.68 -1.1 614,193 - ABZR87_RS18970 0.68 -1.3 614,200 - ABZR87_RS18970 0.69 +0.1 614,321 + ABZR87_RS18970 0.76 +0.2 614,509 + ABZR87_RS18970 0.86 +0.8 614,594 + -0.7 614,605 + +3.7 614,605 + -0.2 614,605 + -0.9 614,605 + +0.5 614,606 - -0.3 614,741 + +1.2 614,742 - +1.4 614,818 + -0.5 614,818 + +0.2 614,818 + +0.8 614,818 + -0.9 614,818 + +0.5 614,818 + -2.5 614,818 + -2.4 614,819 - +0.7 614,819 - -0.5 614,819 - -0.8 614,819 - +0.2 614,819 - -0.7 614,819 - -1.8 614,819 - +0.4 614,903 + ABZR87_RS18975 0.61 -0.4 614,903 + ABZR87_RS18975 0.61 -0.6 614,903 + ABZR87_RS18975 0.61 -0.3 614,903 + ABZR87_RS18975 0.61 +1.0 615,027 - -0.6 615,038 + -0.7 615,038 + -1.1 615,039 - -0.7 615,082 + -0.7 615,083 - +0.2 615,094 + +1.1 615,095 - -1.0 615,136 + +2.1 615,136 + +1.1 615,136 + +0.9 615,137 - -0.3 615,158 + +0.5 615,304 + -0.9 615,304 + +1.6 615,384 + -3.2 615,384 + -0.3 615,385 - -1.0 615,684 + ABZR87_RS18980 0.28 -0.7 615,685 - ABZR87_RS18980 0.28 -0.6 615,685 - ABZR87_RS18980 0.28 -0.9 615,685 - ABZR87_RS18980 0.28 +0.2 615,685 - ABZR87_RS18980 0.28 +1.0 615,685 - ABZR87_RS18980 0.28 +0.5 615,730 - ABZR87_RS18980 0.31 -1.9
Or see this region's nucleotide sequence