Experiment: Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18380 and ABZR87_RS18385 are separated by 13 nucleotides ABZR87_RS18385 and ABZR87_RS18390 are separated by 1 nucleotides ABZR87_RS18390 and ABZR87_RS18395 are separated by 78 nucleotides
ABZR87_RS18380: ABZR87_RS18380 - hypothetical protein, at 490,019 to 492,145
_RS18380
ABZR87_RS18385: ABZR87_RS18385 - hypothetical protein, at 492,159 to 492,440
_RS18385
ABZR87_RS18390: ABZR87_RS18390 - hypothetical protein, at 492,442 to 492,768
_RS18390
ABZR87_RS18395: ABZR87_RS18395 - lysophospholipid acyltransferase family protein, at 492,847 to 493,725
_RS18395
Position (kb) 492
493 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 491.607 kb on + strand, within ABZR87_RS18380 at 491.607 kb on + strand, within ABZR87_RS18380 at 491.607 kb on + strand, within ABZR87_RS18380 at 491.607 kb on + strand, within ABZR87_RS18380 at 491.608 kb on - strand, within ABZR87_RS18380 at 491.608 kb on - strand, within ABZR87_RS18380 at 491.608 kb on - strand, within ABZR87_RS18380 at 491.608 kb on - strand, within ABZR87_RS18380 at 491.837 kb on - strand, within ABZR87_RS18380 at 491.904 kb on + strand, within ABZR87_RS18380 at 491.904 kb on + strand, within ABZR87_RS18380 at 491.904 kb on + strand, within ABZR87_RS18380 at 491.904 kb on + strand, within ABZR87_RS18380 at 491.904 kb on + strand, within ABZR87_RS18380 at 491.905 kb on - strand, within ABZR87_RS18380 at 491.905 kb on - strand, within ABZR87_RS18380 at 491.905 kb on - strand, within ABZR87_RS18380 at 492.165 kb on + strand at 492.166 kb on - strand at 492.262 kb on + strand, within ABZR87_RS18385 at 492.262 kb on + strand, within ABZR87_RS18385 at 492.262 kb on + strand, within ABZR87_RS18385 at 492.262 kb on + strand, within ABZR87_RS18385 at 492.263 kb on - strand, within ABZR87_RS18385 at 492.263 kb on - strand, within ABZR87_RS18385 at 492.299 kb on + strand, within ABZR87_RS18385 at 492.328 kb on + strand, within ABZR87_RS18385 at 492.328 kb on + strand, within ABZR87_RS18385 at 492.328 kb on + strand, within ABZR87_RS18385 at 492.328 kb on + strand, within ABZR87_RS18385 at 492.329 kb on - strand, within ABZR87_RS18385 at 492.370 kb on - strand, within ABZR87_RS18385 at 492.402 kb on - strand, within ABZR87_RS18385 at 492.402 kb on - strand, within ABZR87_RS18385 at 492.444 kb on - strand at 492.444 kb on - strand at 492.583 kb on + strand, within ABZR87_RS18390 at 492.583 kb on + strand, within ABZR87_RS18390 at 492.584 kb on - strand, within ABZR87_RS18390 at 492.584 kb on - strand, within ABZR87_RS18390 at 492.584 kb on - strand, within ABZR87_RS18390 at 492.584 kb on - strand, within ABZR87_RS18390 at 492.608 kb on + strand, within ABZR87_RS18390 at 492.608 kb on + strand, within ABZR87_RS18390 at 492.608 kb on + strand, within ABZR87_RS18390 at 492.672 kb on - strand, within ABZR87_RS18390 at 492.708 kb on - strand, within ABZR87_RS18390 at 492.730 kb on + strand, within ABZR87_RS18390 at 492.835 kb on + strand at 492.849 kb on - strand at 492.891 kb on + strand at 492.891 kb on + strand at 492.891 kb on + strand at 492.892 kb on - strand at 492.892 kb on - strand at 492.892 kb on - strand at 492.892 kb on - strand at 492.892 kb on - strand at 492.894 kb on - strand at 492.902 kb on + strand at 492.914 kb on + strand at 492.914 kb on + strand at 492.914 kb on + strand at 492.914 kb on + strand at 492.915 kb on - strand at 492.915 kb on - strand at 493.115 kb on + strand, within ABZR87_RS18395 at 493.115 kb on + strand, within ABZR87_RS18395 at 493.115 kb on + strand, within ABZR87_RS18395 at 493.115 kb on + strand, within ABZR87_RS18395 at 493.116 kb on - strand, within ABZR87_RS18395 at 493.210 kb on + strand, within ABZR87_RS18395 at 493.302 kb on + strand, within ABZR87_RS18395 at 493.302 kb on + strand, within ABZR87_RS18395 at 493.349 kb on + strand, within ABZR87_RS18395
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 491,607 + ABZR87_RS18380 0.75 +1.4 491,607 + ABZR87_RS18380 0.75 -0.8 491,607 + ABZR87_RS18380 0.75 -1.0 491,607 + ABZR87_RS18380 0.75 -0.6 491,608 - ABZR87_RS18380 0.75 -0.1 491,608 - ABZR87_RS18380 0.75 -0.4 491,608 - ABZR87_RS18380 0.75 +0.5 491,608 - ABZR87_RS18380 0.75 -0.3 491,837 - ABZR87_RS18380 0.85 -0.9 491,904 + ABZR87_RS18380 0.89 -0.7 491,904 + ABZR87_RS18380 0.89 +1.0 491,904 + ABZR87_RS18380 0.89 -1.0 491,904 + ABZR87_RS18380 0.89 +0.4 491,904 + ABZR87_RS18380 0.89 +0.1 491,905 - ABZR87_RS18380 0.89 -0.4 491,905 - ABZR87_RS18380 0.89 +0.1 491,905 - ABZR87_RS18380 0.89 +0.6 492,165 + -1.2 492,166 - -2.0 492,262 + ABZR87_RS18385 0.37 +1.8 492,262 + ABZR87_RS18385 0.37 -0.6 492,262 + ABZR87_RS18385 0.37 +0.2 492,262 + ABZR87_RS18385 0.37 -0.1 492,263 - ABZR87_RS18385 0.37 +1.8 492,263 - ABZR87_RS18385 0.37 +2.0 492,299 + ABZR87_RS18385 0.50 +0.4 492,328 + ABZR87_RS18385 0.60 -0.2 492,328 + ABZR87_RS18385 0.60 -2.2 492,328 + ABZR87_RS18385 0.60 -2.9 492,328 + ABZR87_RS18385 0.60 -0.9 492,329 - ABZR87_RS18385 0.60 -2.1 492,370 - ABZR87_RS18385 0.75 -1.3 492,402 - ABZR87_RS18385 0.86 +2.7 492,402 - ABZR87_RS18385 0.86 +1.0 492,444 - -1.9 492,444 - -2.1 492,583 + ABZR87_RS18390 0.43 -1.2 492,583 + ABZR87_RS18390 0.43 -0.2 492,584 - ABZR87_RS18390 0.43 -1.4 492,584 - ABZR87_RS18390 0.43 -2.7 492,584 - ABZR87_RS18390 0.43 -1.3 492,584 - ABZR87_RS18390 0.43 +0.2 492,608 + ABZR87_RS18390 0.51 +0.1 492,608 + ABZR87_RS18390 0.51 +0.5 492,608 + ABZR87_RS18390 0.51 -0.3 492,672 - ABZR87_RS18390 0.70 +0.1 492,708 - ABZR87_RS18390 0.81 -0.8 492,730 + ABZR87_RS18390 0.88 -2.5 492,835 + -0.1 492,849 - +3.9 492,891 + -0.2 492,891 + +0.3 492,891 + +2.3 492,892 - +2.0 492,892 - +1.5 492,892 - +0.3 492,892 - +0.2 492,892 - -0.3 492,894 - -1.2 492,902 + +1.0 492,914 + -0.3 492,914 + -0.0 492,914 + +2.2 492,914 + -1.1 492,915 - +1.1 492,915 - -1.3 493,115 + ABZR87_RS18395 0.30 -0.8 493,115 + ABZR87_RS18395 0.30 +1.1 493,115 + ABZR87_RS18395 0.30 -1.3 493,115 + ABZR87_RS18395 0.30 -1.1 493,116 - ABZR87_RS18395 0.31 -0.9 493,210 + ABZR87_RS18395 0.41 +0.5 493,302 + ABZR87_RS18395 0.52 -0.0 493,302 + ABZR87_RS18395 0.52 -2.8 493,349 + ABZR87_RS18395 0.57 +0.2
Or see this region's nucleotide sequence